Oryza sativa japonica (Japanese rice) (RAPDB): Os06g0677700
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Entry
Os06g0677700 CDS
T02163
Name
(GenBank) YT521-B-like protein family protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Os06g0677700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dosa03021
]
Os06g0677700
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os06g0677700
Transcription machinery [BR:
dosa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Os06g0677700
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
Os06g0677700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
TFIIA
zf-CCCH_3
zf-CCCH_4
Motif
Other DBs
NCBI-ProteinID:
BAF20273
RAP-DB:
Os06g0677700
UniProt:
Q0DA50
LinkDB
All DBs
Position
6
Genome browser
AA seq
665 aa
AA seq
DB search
MDDGDLSFDFEGGLDQPPAGGGGGPAPHSSDPGGVGGGGGGGGPGDGGGHGRGRGRGSYR
QTVCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDDVKECNM
YKMGFCPNGPNCRYKHVKLPGPPPPVEEVLQKILQIRSFNKFNQHRHNNYNQQGERPQHP
QGSGLPNQNSIDNTTTTTAQPAVGQQAQTTNQQPPQQQQQQQQQQQQQQKPNTNDQVQSV
PNGSSNQATRIATPLPQGPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIE
NVILIFSINRTRNFQGCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSIQWLKLCELSFQK
THHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSELTAILIAAEAKKEEEKAK
GVSADEAADNQDIVLFDDNEEEEEEESEEEEEGNGQESQGRGRGRGMMWPPQMPMLRGVG
PMMGGRGFPPNMIGDGFGFGGGFGMPDPFGVPRGFPPFGPRFPGDFARGGPMPGMVFPGR
PPQPGGMFPMGLEMMMGPGRGPLMGGLGMGGPGRPNRPVGMAPFMPPPPPPNNRGTKREQ
RRPGGERGDRYETTSDQGSRGHDATGNSGAEGARSQSGDRYGRSALRDDDSESDEEAAPR
RSRKR
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggcgacctcagcttcgacttcgagggcggcctcgaccagccccccgccggc
ggcggcggcggccccgcgccgcactcgtccgaccccgggggcgtgggcgggggcggcggc
ggcggcggccccggggatggcggcgggcacggccgcggccgcggccgcggcagctaccgg
cagacggtgtgccggcactggctccgcggcctgtgcatgaagggggaggcctgcgggttc
ctgcaccagttcgacaaggcccggatgcccgtgtgccgcttcttccgcgacttcggcgag
tgccgcgagcccgactgcgcatacaagcactcctacgacgatgtcaaggagtgcaacatg
tacaagatgggcttttgccctaatggtcctaattgccggtacaagcatgttaagctacca
gggccaccacctcctgttgaggaagttctgcagaagattttgcagattcgctctttcaat
aaattcaatcagcataggcacaataactataatcagcaaggggagagacctcaacatcca
cagggttcaggtttacctaaccaaaatagtatagataatactacaaccacaaccgctcag
cctgctgttggacagcaagcacaaactacaaatcaacagccaccacagcagcagcagcag
caacaacaacaacaacaacaacaacagaagccaaatacaaatgaccaagtccaatctgtt
ccaaatggctcgtcgaatcaagccactagaattgcaacgccccttccacaagggccatct
aggtacttcattgtcaagagttgcaatagggagaatctggagatatcagttcagcagggc
atttgggctacccaaaggagtaatgaggctaaacttaatgaagcctttgaatccattgag
aatgttattttgatattctcaatcaatagaactcgtaatttccagggttgtgcaaagatg
acttctaggattggtggctacattggtggtggaaattggaaatctgctcatggaacggca
cattatggtcggaacttctccatacaatggcttaagctctgtgaactgtcatttcagaaa
acacatcatctgcgcaatccatacaatgacaatctccccgttaagatcagccgagattgc
caggaattagaacccttcattggtgagcaattggcttcactgctttatctagaaccagac
agcgagctgacggctatactaattgcagcggaggccaagaaagaagaagaaaaggctaaa
ggagttagtgctgatgaggcagctgacaatcaagatattgtgctgtttgatgacaatgaa
gaagaggaggaagaggaaagcgaggaggaagaagagggcaatggccaagaatctcaagga
aggggaagaggaagagggatgatgtggccacctcaaatgccaatgctgcgtggtgttggg
ccaatgatgggagggcgtggcttccctcccaacatgatcggcgacggttttggttttggt
ggtggttttggtatgcctgatccttttggtgtgcctcgtggttttcctccatttggccca
agattccctggtgacttcgctagaggaggtcctatgcctggtatggtcttccccggcagg
cccccacaacctgggggcatgtttcctatggggctagaaatgatgatgggtcctggtcgt
ggaccgctaatgggaggcttgggaatgggtgggcctggacggccaaatcgacccgttggt
atggctcccttcatgcccccaccacctccaccaaataaccgtggcacgaagcgggagcaa
agaaggccaggtggtgagaggggtgacaggtatgagacaacttcagatcagggaagcagg
ggtcatgacgccactgggaattctggagcagaaggagccaggtcgcagtctggggacaga
tacggtagaagcgccctccgagacgatgacagtgagagtgacgaggaagcagcgcccagg
aggtcgcggaaacgataa
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integrated database retrieval system
