Oryza sativa japonica (Japanese rice) (RAPDB): Os07g0164100
Help
Entry
Os07g0164100 CDS
T02163
Name
(GenBank) Histone deacetylase superfamily protein
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dosa01009
]
Os07g0164100
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os07g0164100
04131 Membrane trafficking [BR:
dosa04131
]
Os07g0164100
03036 Chromosome and associated proteins [BR:
dosa03036
]
Os07g0164100
Enzymes [BR:
dosa01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
Os07g0164100
Protein phosphatases and associated proteins [BR:
dosa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
Os07g0164100
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
Os07g0164100
Membrane trafficking [BR:
dosa04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Os07g0164100
Chromosome and associated proteins [BR:
dosa03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
Os07g0164100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-ProteinID:
BAF20871
RAP-DB:
Os07g0164100
UniProt:
A3BGV4
LinkDB
All DBs
Position
7
Genome browser
AA seq
623 aa
AA seq
DB search
MASDMRSLNSQKGQSCGVSDQACHSKSKSGNDGKPSHAKANGVSSLSGSHNDEKILKENS
GACNLNSDHANPLSVDGTKVSTARSELIDSSGHDGCLHVKNESCMACDDLLQESDKEQPG
GTLEDLFSFNDEEDDDSDWEPSARLALSRWFCLNCTVPNMEGFTHCQNCDELKGSVVVGY
DAFKAHLAQAALLSADAALPSVSTAVGFDERMLLHSEIEIKPNPHPERPDRLRAIAASLA
AAGIFPSKCVMVPPREITKEELLRVHTSDHIDSVEQTKNMLYSYFTSDTYANGHSACAAK
LAAGICADLANLIVSGRVRNGFAMVRPPGHHAGVKQAMGFCLHNNAAVAALAAQRAGAKK
VLIVDWDVHHGNGTQEIFDGDNSVLYISLHRHEDGSFYPGTGAANEVGVMDGQGFSVNIP
WSRGGVGDNDYIFAFKHVVLPIAAEFAPDITIISAGFDAARGDPLGCCDVTPAGYSRMAS
MLTACSQGKLLVILEGGYNLRSISSSATEVVKVLLGDSPVYDTDATEPSEEGIQTVLQVL
SIQQQFWPVLVPSFASVLALQRSVFSRYTTEVNKMKRKHAGGAGPFWWKWGSKRLLYEVL
FEGRCLRKTKDTGKEKLNDEAEP
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgatatgaggtcactcaacagccaaaagggacagagttgtggagtttcagac
caagcttgccacagcaaaagcaaaagcggcaatgatggaaaaccatcacatgctaaagca
aatggagtttcctcgttgagcgggagtcataatgatgagaaaattttgaaagagaactct
ggagcatgcaatttaaattccgaccatgccaatcctttatcagtagatgggaccaaagtt
tctacagcaaggtcggaacttattgacagttcaggccatgatggttgtctgcatgtcaag
aatgaaagctgtatggcttgtgatgatctgcttcaagagtctgacaaagaacagcctggg
ggtacactggaggatctattttcctttaatgatgaagaggatgatgacagtgactgggaa
ccctctgctcgccttgctttgagcaggtggttttgcttgaactgtacagtgccaaacatg
gaggggtttacacattgtcagaattgcgatgagcttaagggatctgtggtagttggatat
gatgctttcaaagctcatcttgcacaggcagctttgttatctgctgacgcagcgctgcca
tcagtatctacagctgtcggttttgatgaaagaatgttgctccatagtgagatagagatt
aaaccaaatccacatccagaaaggcctgaccgccttcgtgcaatcgctgccagtcttgct
gctgcaggtatcttcccttcaaaatgtgtcatggtacctcctcgagaaatcactaaggaa
gaactcctaagggtccatacttcagatcacattgacagtgttgagcagacaaagaacatg
ctttacagttacttcacttcagatacctatgcaaatggacactcagcatgtgctgccaaa
cttgcagcagggatatgtgctgatcttgctaacttgatagtatctgggcgtgttcgcaat
ggatttgcaatggtgagacctcctggccatcatgcaggggtgaaacaagccatgggtttt
tgtcttcacaataatgcagcagtggctgcattagctgcacaaagagctggtgccaagaaa
gtcttaatagttgactgggatgtccaccatggcaatggaacacaggagatatttgatggg
gacaattctgtcttgtacatatcattacatcggcatgaggatggaagcttctaccctgga
actggggcagcaaatgaggtgggagttatggatggccaaggattctcagtcaatatacct
tggagccgtggtggtgttggagacaatgactacatatttgcttttaagcatgtggtgctt
ccgatagctgcagaatttgctccagacatcaccatcatatctgcaggatttgatgcagcg
aggggtgaccctctgggttgttgtgatgtcacacctgctggatattctaggatggcgtcc
atgctaactgcttgttcacagggaaaattgttggttatacttgagggaggatacaatctt
cggtctatatcctcatcagctactgaagttgttaaggtcctacttggggatagtcctgtt
tatgatacagatgcaactgaaccatcagaggagggcatacagactgtcttacaagtcctg
agtatccagcagcaattttggccagttttagttccatcctttgcatcagttctggcactg
cagcggtcggttttttccagatataccactgaagtaaacaagatgaaaaggaagcatgca
ggaggggcaggacccttctggtggaaatgggggagtaaaaggctactgtacgaagtgcta
tttgagggccgctgtctgaggaaaaccaaggatacaggcaaagaaaaattgaatgatgaa
gcagagccctaa
DBGET
integrated database retrieval system
