Oryza sativa japonica (Japanese rice) (RAPDB): Os07g0495900
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Entry
Os07g0495900 CDS
T02163
Name
(GenBank) Similar to Regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03013
Nucleocytoplasmic transport
dosa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
Os07g0495900
03015 mRNA surveillance pathway
Os07g0495900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os07g0495900
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Os07g0495900
5.6.2.5 RNA 5'-3' helicase
Os07g0495900
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
Os07g0495900
mRNA cycle factors
Common to processing body (P body) and stress granule
Os07g0495900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NPHP3_N
UvrD-helicase
Helicase_RecD
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
AAA_32
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
BAF21612
RAP-DB:
Os07g0495900
UniProt:
A0A0P0X689
LinkDB
All DBs
Position
7
Genome browser
AA seq
1121 aa
AA seq
DB search
GDFVEHACRYCGIHNPACVARCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKD
SPLGETILECYNCGCRNVFLLGFISAKAENVVVLLCREPCLSVNALKDMNWDLSQWCPLI
DDRCFLSWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQQVA
LKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDSLTVRWDIGLNKKRIAYFVFPKEDNE
LRLVPGDELRLRYSGDSSHPAWQSVGHVIKLTAQEEVALELRASQGVPVDLNHGFSVDFV
WKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEHQIIRNTLPRRFGAPGLPELNAS
QVLAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKI
SSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDE
KKYKALKRATEREILQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVL
GVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVILGVKPFRLQVQYRMHPCLSDFP
SNCFYEGTLQNGVTVNERQTPGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAAN
VEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGR
EKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHY
KEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFLGGGQGVMQGASFGAAGTNPVADKRS
GRGKGHSFVPFGPPNGAHKPGVHPSGYPLPRMPFPPFAGAHSQPYAIPTRGSLHGPIGAV
PPVPQPGNRNFGPRGNTGGPIGGHLAHQQSSQQAMGGMGSAFNFPGLENPSSQPSGGGPM
SQTGLMTQMPVQGLSQTFRDGFSIGGMSQDFFGDDFKSQGSHVAYNIADFSTQASQGGYG
VDYSQGPQSGYPGNYLNQNAHPGYSHMGAANDIVSQDHMAHGSHGMFTQAGYNDSSQDES
SQMHFGMAGPGLQSQPMMNPLYSQSYAHYNTQPQSLQPPPQ
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
ggcgacttcgtcgagcacgcgtgccggtactgcgggatccacaaccccgcgtgcgtcgcg
cgctgcaacgtgccgtcctgccgcaagtggttctgcaactcgcgggggaacacgtccggc
tcccacatcgttaaccacctggttagagcaaaacataaggaagtttgcctacacaaggat
agtccgttgggtgaaacaattcttgagtgctacaattgtggttgtcggaatgtattcctt
cttggttttatctcagcaaaggcagagaatgtcgttgttcttctgtgcagagagccctgt
ttgagtgttaatgcattgaaggatatgaattgggacctcagtcagtggtgtcctcttatt
gatgacaggtgtttcttatcatggcttgtcaaggttccctcagaacaggagcagctgagg
gctcgtcaaattagtgcgcaacaaattaacaaagtggaagagctctggaaaacaaaccct
gatgcctctcttgaagatcttgaaaaaccaggtgtcgatgatgagccccaacaagtggct
ctgaagtatgaagatgcttaccagtatcaaaatgtgtttgctccactgataaagcttgag
gctgattatgacaagatgatgaaagagtcacagagcaaggacagcttgaccgtgcggtgg
gatattggactgaacaagaagcgcatagcctatttcgtgtttccaaaggaagacaatgaa
ttgagacttgtcccaggagatgagctgcggcttcgatattctggtgattcttcacaccct
gcatggcagtctgtgggtcatgtgattaaacttacggcacaagaggaggtagcacttgaa
cttcgtgctagtcagggagttcctgttgatttgaaccatggattcagtgtggattttgtc
tggaagagtactagctttgataggatgcagggggcaatgaaaacttttgctgtggatgag
acaagtgtcagtgggtacatataccatcaccttttgggacatgaagttgagcatcaaata
atacgtaatacactaccgagacgctttggtgcaccaggacttccagaactaaatgcttca
caggtcttagcagttaaaagtgttctccagaagccaattagtttgattcaaggtccacct
ggcacagggaaaactgtcacatctgctgcgatcgtgtatcacatggcaaaacaaggccaa
ggacaggtccttgtatgtgctccaagtaatgtagccgttgatcagttggcagagaagata
agctctactggtctcaaggttgtcaggctatgtgcaaaatctagggaagctgtttcatct
cctgttgagcatttgacacttcattatcaggttcggcaccttgatacatctgaaaagagt
gaattgcataagctacagcaactcaaagatgaacaaggtgaattgtcaagcagtgatgag
aaaaagtacaaggcattaaaacgagctactgagagagagatattacaaagtgctgatgtg
atttgttgcacttgtgttggtgctggagaccctcgtttagcaaacttccgattccgtcaa
gttcttattgatgaatctacacaggcaacagagcctgaatgtctcattccattggtgctt
ggtgtaaagcaggttgttcttgttggagatcattgtcaactgggcccagtcatcatgtgc
aaaaaggcagctcgtgcaggattagcacaatcgctctttgaacggcttgttatccttgga
gtcaagcctttcaggctacaggtacaatataggatgcacccttgtctttcagacttcccg
tccaactgcttctatgaaggcacactgcaaaatggagtaactgtaaacgagagacagaca
cctgggattgattttccttggcctgttccaaatcggcctatgttcttctacgtgcagatg
ggacaagaagagatcagtgccagtgggacatcatacctcaatagaactgaagctgcaaat
gttgaaaagattgtaactacatttttaaggagtggtgttgtaccaagccagattggagtt
atcacaccttatgaaggacaaagggcatatattgtgaattatatgtcaaggaatggctct
cttcgccaacaactatacaaagaaattgaggtagcaagtgttgattccttccagggaaga
gaaaaagattacataatcctgtcttgtgttagaagcaatgagcaccagggtattgggttt
cttaatgatccacgcaggttaaatgtcgcattaactcgtgctcggtacggtatagttatt
cttgggaaccctaaagttctaagcaagcagccactctggaatagtttattgacacattat
aaggagcatgagtgtttggtagaaggacctttgaacaacttaaagcagagtatggtgcaa
tttcaaaagccaaaaaagatctacaatgatcgacgactcttcctgggtggcggtcaaggt
gttatgcaaggagctagttttggtgctgcaggcacaaacccagtggcagataagagaagt
ggtagggggaaagggcattcctttgttccatttggcccaccaaatggggctcataaacct
ggtgtgcacccatctggctatcctttacctcgtatgcctttccctccatttgctggggct
cattctcaaccctatgctattccaacccggggatcattgcacggaccgattggagctgtt
ccacctgtgcctcaacctggaaacagaaactttggacctcgtggaaatactggtggccct
attggtgggcaccttgctcaccaacagagttctcagcaagctatgggaggcatggggtca
gcttttaactttcctggcctggagaatccgagcagtcagccttctggtggaggtccaatg
tcccagactggattgatgacacagatgcctgtccaaggtctcagtcaaacattccgcgat
gggttttccattggtgggatgtctcaggacttctttggagatgatttcaagagccaagga
tctcatgtggcatacaacattgctgatttttccactcaggcttctcaaggaggctatggt
gttgactactctcaaggaccccaatctggatatcctgggaattatttgaaccaaaatgca
cacccagggtattcccatatgggtgcagcaaatgacattgtctctcaggatcacatggcc
catggttcacatggaatgtttacacaagcgggatacaatgactcttcacaagatgagtca
tcacagatgcattttggaatggctggtcctggtcttcagtctcagcccatgatgaacccg
ctctactctcagtcatatgctcattacaacacccaaccgcagtctctccaacctcctccc
cagtga
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