Oryza sativa japonica (Japanese rice) (RAPDB): Os07g0626200
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Entry
Os07g0626200 CDS
T02163
Name
(GenBank) DNA-binding SAP domain containing protein
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03013
Nucleocytoplasmic transport
dosa03015
mRNA surveillance pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os07g0626200
09122 Translation
03013 Nucleocytoplasmic transport
Os07g0626200
03015 mRNA surveillance pathway
Os07g0626200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os07g0626200
03041 Spliceosome [BR:
dosa03041
]
Os07g0626200
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Os07g0626200
Spliceosome [BR:
dosa03041
]
Complex C
Other components
EJC/TREX
Os07g0626200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
SAP_new25
DUF1344
Motif
Other DBs
NCBI-ProteinID:
BAF22248
RAP-DB:
Os07g0626200
UniProt:
Q0D4H5
LinkDB
All DBs
Position
7
Genome browser
AA seq
792 aa
AA seq
DB search
MSTCPVLNDRPIDEWKVTELKDELRRRDLSIKGLKDDLVKRLAEALQGEVIDGGEETVNG
TPPVENQTQDGALVLDDASGFQASAEQNVDEGPAEVAAKNEGLVSVIEASTEGGTLVLDD
GSGFQASTEQNVDEGPAEVAAKNEGLASVTEASTEDGTLVLADASGIQASTEQNVDEGPS
EVAAKNDTSTNTKLEESSAKGEPCVSIGCEILEQETKSSHLDVILSHADAVASAEEMITE
SLILKKDSNENDLMYEKDQKDSDHISTDCKPEQSGPKDQVSEVNQDLESQIKCVSISPDD
ILVNKNDNVEGNMNADNFDLGLESKQDIVKPSSSNPSSVGDDLQTPDDDKEISLIDMSLQ
DTDMSLKKKEGSPDSIYPEKLNLDRSSGDESMEEDAMETKHMDSKTIPDYLEGKSEVTLE
HVSSGDESMEEDVMETKHVDSNTKVEHVSSGDESMEEDVMETKHVDSNTKPDYLEGKNDV
TLEHVVKEVILLDTVTEGSSVDQKEAISQEKPVMPTEKRKAEDQEVVANNEPIKRQRLWN
VDDVKPEQATSKLSGSDASKVVHPPARRRSFGRSDSTARGNSPKERMVPPPQKPATTSLR
IDRFVRPFTLKAVQELLGKTGSVCSFWMDPIKTHCYVTFSSVEEALATRNAVYNLQWPPN
NGSSLVAEFVDPHEVKAKLEPPPPPPAPINPTAATAPSHQSKANQIMPPHAADTSRGLLP
TPPALARLPTFNNAPAREMLPPAPKNPEPPVVVTLDDLFRKTQASPRIYYMPVSEEVVSA
KLAARGKGKKAA
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgtgtcctgtgctgaatgaccgaccaattgatgagtggaaggttactgaattg
aaggatgagctccgtaggagggatctatctattaaaggtttgaaggatgatcttgtgaag
aggcttgctgaggcccttcagggggaggttattgatggcggggaagaaacagtcaatgga
actccccctgtggagaatcagacacaagacggagctcttgttttagatgatgcatctggt
ttccaggcttcagcagaacaaaatgttgatgaaggccctgctgaggttgctgcaaagaat
gaaggccttgtctctgttatagaagctagtacagagggcggaactcttgttttagatgat
ggatctggtttccaggcttcaacggaacaaaatgttgatgaaggtcctgctgaggttgct
gcaaagaatgaaggccttgcctctgttacagaagctagtacagaggacggaactcttgtt
ttagctgatgcatctggtatccaggcttcaacggaacaaaatgttgatgaaggtccttct
gaggttgctgcaaagaatgataccagtactaataccaagttggaggaatcatctgctaaa
ggtgaaccatgtgtcagtataggctgtgagattctagaacaggaaacgaaatcatcacat
cttgatgttattttgtcacatgctgacgctgttgcaagtgcagaggaaatgattacagag
agcctgattcttaagaaagattccaatgagaatgatttaatgtatgagaaggaccaaaag
gattctgaccacataagcactgactgcaaacccgagcagtctggaccaaaggatcaggta
tctgaagtcaaccaagatctagagtctcaaattaagtgtgtgtcaatttctcctgatgat
atactagtcaataaaaacgacaatgtagaaggcaacatgaacgctgacaattttgattta
ggactagagtctaagcaggatattgtcaagccatcatccagcaatccctcctccgttggt
gatgatttgcagacaccagatgatgacaaagagatatctctgatcgacatgtctctgcaa
gatactgatatgagcttgaaaaagaaagaaggcagtcctgatagtatttatcctgaaaaa
ctaaatttggataggagttcaggagatgaatcaatggaggaggatgcgatggaaactaag
cacatggattccaaaacaatacctgattatctcgaaggaaagagtgaggtcaccttagag
catgtgagttcaggagatgaatcaatggaggaggatgtgatggaaactaagcacgtggat
tccaatacaaaagttgaacatgtgagttcaggagatgaatcaatggaggaggatgtgatg
gaaactaagcacgtggattccaatacaaaacctgattatctcgaaggaaagaatgatgtc
accttagagcatgtggtaaaagaggtgatcctccttgatactgtcactgagggttcatct
gtagatcaaaaggaagctataagtcaagagaagccagtaatgccgactgaaaagaggaaa
gctgaagatcaagaagttgttgcaaataatgagccaatcaaacgtcagcgcctatggaat
gtggatgatgtcaaacctgagcaagcaacttccaaactaagtggttctgatgcttctaaa
gttgtacacccgcctgctcgaagacgttcttttggcaggtctgattcaacagcacgtgga
aattctccgaaggagaggatggtaccaccgcctcagaaacctgcaacaacttccttgaga
atcgatcgatttgtgcgcccgttcactttgaaagctgtgcaagagcttcttggtaaaact
ggatctgtttgtagcttttggatggatcctatcaagactcattgctatgtcacattctct
tcggtggaggaagctctggctaccaggaatgctgtttacaatctccaatggcctccaaac
aatggcagttccttagttgctgaattcgttgatccacatgaggtgaaggccaaacttgaa
ccccctcccccacctccagcacctatcaaccccacagcagctacagcaccttcccaccaa
tccaaggccaaccaaatcatgcctcctcatgctgctgatacatcaagggggctattaccc
acaccaccagcacttgctaggcttccaaccttcaacaacgcaccagcgagggagatgctt
ccgcccgctccaaagaacccagaaccacctgtggtggtgactcttgatgatctctttagg
aagacacaggcctctccgaggatctactacatgcctgtttcagaagaggtggtatctgcc
aagcttgcagcacgcggcaaagggaagaaggcagcgtag
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