Oryza sativa japonica (Japanese rice) (RAPDB): Os07g0644300
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Entry
Os07g0644300 CDS
T02163
Name
(GenBank) Similar to XPA-binding protein 2 (Adapter protein ATH-55)
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os07g0644300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os07g0644300
03041 Spliceosome [BR:
dosa03041
]
Os07g0644300
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
Os07g0644300
Spliceosome [BR:
dosa03041
]
Complex B
Other components
Prp19-related factors
Os07g0644300
Complex C
Os07g0644300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_19
TPR_15
TPR_12
TPR_8
ARM_TT21
ARM_TT21_C
TPR_16
TPR_5
HTH_psq
Motif
Other DBs
NCBI-ProteinID:
BAF22362
RAP-DB:
Os07g0644300
UniProt:
A0A0P0X9Y1
LinkDB
All DBs
Position
7
Genome browser
AA seq
931 aa
AA seq
DB search
MPSPAGGPVAVAAASAAAAEALGISPEMYPTEDDLAYEEEILREPFKLKGWWRYLVARAA
APFAKRAVIYERALKALPGSYKLWHAYLRERLDHARPHPISHHAYASLNNTFERALATMH
KMPRVWVLYLTSLLDQRLLTRARRAFDRALRALPVTQHDRIWPLYLRLASLPACPVETSL
RVFRRYLQYDPSHAEDFIDFLISANRWQEAADRLASVLNDDGFRSVKGKTQHQLWLELCE
ILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRTLYEKARDVFEEGVASV
MTVQEFSVVFEAYTQFEQSMLAAKLEAAEEEGAGSEGEEEAGRKNGMDKLSKKFLADCWL
NDEDDTDLRLARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFEKDPTRQVATYVEA
VKTVDPMKAAGKPHTLWVAFAKMYEKHNRLDSAEEIFKKATQVNYKAVDHLASIWCEWAE
MELRHSNFDKAIELMRQATAEPSVEVKRRAAAEGDEPVQLKVHKSLKLWSFYVDLEESLG
TLESTRAVYERILDLRIATPQIVLNYAYLLEENKYFEDAFKVYERGVKIFKYPHVKDIWV
TYLTKFVRRYQRSKLERARELFDEAVKQAPPQEKKVLYLQYAKLEEDYGLAKRAMNVYDE
AVRAVPNSEKMSMYEIYIARAAELFGVPRTRQIYEQAIESGLPDRDVMTMCMKFAELERN
LGEIDRARAIYVHASNYADPNSHPEFWNKWNEFEIQHGNEDTFREMLRIKRTVAASRSQT
HFILPEYLMQRDQRLNLDEAVDTLKRAGVPEDEMANLERQLAPGPSTAPPAPSTATAPAN
RMMNFVSAGVQAQAESSSRQQQAAATNNEDIELPDESDEEEDDVQIAEKSVPAAVFGELG
KRAAENREEESSGAQENEQLGALERIKRRRQ
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgcctgcggggggtccggtggccgtggcggcggcgtctgcggcggcggcggag
gcgctggggatctcgccggagatgtacccgacggaggacgacctggcgtacgaggaggag
atcctgcgcgagccgttcaagctcaaggggtggtggcgctacctcgtcgcccgcgccgcc
gcgccgttcgccaagcgcgccgtcatctacgagcgcgcgctcaaggcgctcccggggagc
tacaagctgtggcacgcctacctccgcgagcgcctcgaccacgcgcgcccgcaccccatc
tcccaccacgcctacgcctccctcaacaacaccttcgagcgcgccctcgccaccatgcac
aagatgccccgcgtctgggtgctctacctcacctcgctgctcgaccagcgcctgctcacg
cgcgcgcgccgcgccttcgaccgcgcgctgcgcgcgctccccgtcacgcagcacgaccgc
atctggccgctctacctccgcctcgcctcgctcccggcctgccccgtcgagacctcgctc
cgcgtcttccgacgatacctccagtacgacccctcccacgctgaggacttcatcgatttc
ctcatctccgcaaaccgctggcaggaggccgccgaccgcctcgcgtccgtgctcaacgat
gacggcttccgctccgtcaagggtaagacccagcaccagctctggcttgagctctgcgaa
atcctcaccaagcatgccgatgaggttgcggggctcaaggtggacgctatactgcggggc
ggcattcgcaagttcaccgatgaggttggcaagctgtggacctccctggccgattactac
gtcagaagaaccttgtatgagaaggcgagggatgtcttcgaagagggggttgcttcggtg
atgacggtgcaggaattcagcgtggtgtttgaggcgtacacacaattcgagcagagtatg
cttgcggcaaagctggaggcagccgaggaggagggtgcggggagtgagggggaagaggaa
gcgggcaggaagaatgggatggacaagctgtcgaagaaattcctcgcagattgctggctg
aatgatgaggatgatactgatttgaggctggcaaggtttgagcggctgttggatcgccgg
ccagagctcctcagcagtgtcctgctgcgacagaatccgcataatgtggaggaatggcac
aggagggtgaaactttttgagaaggatcctacaaggcaagtagccacatatgttgaagct
gtgaaaaccgtagaccctatgaaggcagctggaaaaccacatactctatgggtggcattc
gcaaagatgtatgagaaacataatcgtctagatagtgctgaagagatctttaaaaaagca
acacaggtgaactacaaggcagttgaccacttagccagtatttggtgtgagtgggcagag
atggagctgaggcacagtaattttgacaaggctattgagctgatgaggcaagctactgca
gaaccctctgttgaggttaagaggcgagctgctgctgagggggatgaacctgtccaattg
aaagtacataaatccctgaaactgtggagcttctatgtggacctggaggaaagtcttgga
acattggaatcaactcgtgcagtttatgagagaatattggatttacgaattgccactccc
caaatagttctcaattatgcatatcttcttgaggaaaacaagtatttcgaagatgcgttt
aaagtgtatgagcgtggtgtgaaaatttttaaatatccccatgttaaagacatttgggtg
acctacctcacaaagtttgtaagaaggtatcagagaagcaagttagagcgggcaagagaa
ctgttcgatgaagctgtcaaacaggctcctccacaagaaaagaaggtattgtatttgcag
tatgctaagctggaggaagactatggccttgcgaaacgtgcaatgaatgtatacgacgaa
gctgtaagggctgttcctaacagcgaaaagatgagtatgtacgaaatatatattgcacgg
gctgcggagctatttggtgttccaagaacaagacagatatatgagcaagcaattgaatct
ggactcccagacagagatgtcatgacaatgtgcatgaaatttgcagaacttgaaagaaac
cttggagaaattgatcgtgcccgtgccatttatgtccacgcatccaactatgctgatcca
aactctcatcctgaattttggaataaatggaatgaatttgagattcagcatggtaacgaa
gatacattcagggagatgcttcgcatcaagcgtactgtggctgctagccgcagtcagact
catttcatactcccagagtacttgatgcagagggaccagaggctgaacctcgatgaggca
gttgacactctgaaacgagccggtgttcctgaggatgagatggctaacctagaaaggcaa
ctagcgccaggaccttccacggctccaccagctccaagcactgctactgctcctgctaac
cggatgatgaactttgtcagtgctggagtgcaggcacaggctgagagcagcagcaggcaa
caacaggctgctgctactaacaatgaggacattgagctgcccgatgagagcgacgaggag
gaagacgatgtccaaattgcggagaagagtgttcccgctgcggtgtttggagagctcggc
aagagagctgcagagaacagggaggaggaaagctctggtgcccaggagaatgagcagctt
ggcgcccttgagaggattaagcgaaggcgtcaatga
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