Oryza sativa japonica (Japanese rice) (RAPDB): Os08g0116800
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Entry
Os08g0116800 CDS
T02163
Name
(GenBank) Exoribonuclease domain containing protein
KO
K12587
exosome complex component MTR3
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os08g0116800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os08g0116800
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Os08g0116800
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
BAF22770
RAP-DB:
Os08g0116800
UniProt:
A3BP26
LinkDB
All DBs
Position
8
Genome browser
AA seq
262 aa
AA seq
DB search
MSAAAAATDGTYSPAAAAGEKRRERKEELRRHLAEDADWPRADGRSFHDCRPAFMQTGPT
TAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFATPIRGQGMDNKE
YSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMIYDLVT
SVSVSCFGKNIIIDPTSDEEAWQDGSIMVAYMPARKEITQLTLTGEWSDGKITNAVELCM
DACSKLCDILRERLKDAASLAE
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggcggcggcggctactgatgggacgtactctccggcggcggccgcgggggaa
aagcggagggagaggaaggaggagctgcggcgccacctcgccgaggacgccgactggccc
cgcgccgacggccgctccttccacgactgccgtcccgcatttatgcaaacaggaccaaca
actgccgcatcaggatctgcttatgcagaatttgggaagacaaaggtcattgtgtcagtg
tttggaccaagagaaagcaagaaagcaatgttgtacagtgataccggtagactcaattgc
aatgtgagctacacaacatttgccacccctatacgtggacagggaatggacaacaaggag
tactccgcaatgctccataaagccctggaaggcgcagtgatgctacacacttttccaaaa
accactgttgatgtctttgcgttggttcttgagtctggtggcagtgatcttcccatcatt
atttcttgtgctagtcttgcgttggctgatgccggaatcatgatatatgaccttgttaca
tcggtatctgtgtcctgtttcgggaagaacattatcatcgatccaacctctgacgaggaa
gcatggcaagacggcagcattatggtggcgtacatgccagcccgcaaggagatcactcag
ctaacacttactggagagtggtctgatggcaaaatcaccaatgcggtagagctctgcatg
gatgcttgtagtaagctctgtgacatactacgggagcgcttgaaagatgctgccagcttg
gctgagtga
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