Oryza sativa japonica (Japanese rice) (RAPDB): Os08g0177700
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Entry
Os08g0177700 CDS
T02163
Name
(GenBank) Similar to U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os08g0177700
09123 Folding, sorting and degradation
03018 RNA degradation
Os08g0177700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os08g0177700
03041 Spliceosome [BR:
dosa03041
]
Os08g0177700
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Os08g0177700
mRNA degradation factors
5'-3' decay
Lsm complex
Os08g0177700
Spliceosome [BR:
dosa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
Os08g0177700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-ProteinID:
BAF23038
RAP-DB:
Os08g0177700
UniProt:
Q6ZBS1
LinkDB
All DBs
Position
8
Genome browser
AA seq
98 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFEREQDDPLKL
SGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPFQSDGA
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggcgcaaggagacggtgctggacctggccaagttcgtcgacaagggcgtccag
gtcaagctcaccggcggcaggcaagttacagggactttgaagggctatgaccagcttcta
aacttggtgcttgatgaagcggttgaatttgaaagagagcaagatgatccattgaaacta
tcagggaaaaccagacagcttggtcttattgtctgtaggggtacagcggtgatgcttgta
tcgccaaccgatggaacggacgagattgccaaccccttccaatctgatggtgcataa
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