Oryza sativa japonica (Japanese rice) (RAPDB): Os08g0187700
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Entry
Os08g0187700 CDS
T02163
Name
(GenBank) Regulation of nuclear pre-mRNA protein domain containing protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Os08g0187700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dosa03021
]
Os08g0187700
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os08g0187700
Transcription machinery [BR:
dosa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Os08g0187700
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
Os08g0187700
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_2
Motif
Other DBs
NCBI-ProteinID:
BAF23065
RAP-DB:
Os08g0187700
UniProt:
Q6ZAQ9
B7EPG0
LinkDB
All DBs
Position
8
Genome browser
AA seq
971 aa
AA seq
DB search
MAAAAAVAGAGGVGHVVERFRARLREEQEEEEGGGGEVAAAAVVRVYVEVLSELTFNCKP
IITELTIIAGQHAALAARGIADAICARIAEVSADQKLPSLYLLDSIVKNIGREYVGHFAA
RLQKVFCDAYRKVHRNQHAAMRHLFGTWSQVFPSSVLRGIEDELQFSPLENKRSATATDI
RQSESISPRLSHAIHVNPKYLEAQQQFKQSTSVHQPITRGNRQMNDVEEDQINGLTSKSS
RGWPATNSKLQKSTMLYADDLDQQEAFCSHTGLIRPSSPHLLSKHPSILNTEGPLANSRR
TMSRSPPLDVLPRNASPKRALERPPLSHSVLGPDPRRLPDRNGWFERKWAFEDGAQRPSM
SILDEEYRKQSARELIDAYGNSQGKDVDERLPKMQRLDSNGMAGRPSAQKWLTSEEEEYT
WEDMSPTLTDRNRTSVPSLPPLGTLRAGFLGPNSGLLESDIVRHSWPGQAPRPAIDGPPL
NLEDRIPTNGPVDRTNNRRYPGNFGVQNGAFLDYQSSEHTLDPGRTTMPVPPWQQTIGQP
LRVQAPQPASILNRMPLPTDSEVPVKRLATGGTYDALNVDIPLLEKQRSSPAHAPMEWPL
NTQSLTIQPIPPDTKHPRGASDGLDSRPFISQGSSSSVFVPQHHALDRRTMNADDLAQPS
YQHPDLLSLSQQNQGTVLGNQGQPHHPPQFHPHPHSHLQETIRSFAPSMSVAPPQNIFHG
QGGSAAALLPSSFPVPPAVPPYGLQSMPGFPLPSLPSGPPPPSQIGPSSSQVGGPPLVSG
LLSNLMQHGIISLQPPSQPQDSVGVDFNVDLKVRNESVINALYQDLPRQCKTCGLRFKCQ
EEHRAHMDWHVTKNRNSKNRKQTSRKYFVTVGEWLRAAETVGNDGVPSFEPAEPVADAKE
EKELAVPADEDQTTCALCQEPFEDFYSDETEEWMYKGAVYMNAPDGNIGGLERSQLGPIV
HAKCLSGPNNT
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggcggttgcgggggcgggcggggtggggcacgtggtggagaggttc
agggcgaggctgcgggaggagcaggaggaggaggaggggggaggcggggaggtggcggcg
gcggcggtggtgcgggtgtacgtggaggtgctctcggagctcacgttcaactgcaagccc
atcatcaccgagctcaccatcatcgccgggcagcacgcggccctcgccgcgagggggatc
gccgacgccatctgcgcccgcatcgcggaggtgtctgccgaccagaaattaccatctttg
tatctgctagacagtattgtgaagaacataggacgagaatatgtagggcattttgccgct
aggttgcagaaggtattttgtgatgcctataggaaagttcaccgcaatcagcatgctgca
atgcgacacctctttggtacctggtcacaagtgttcccttcctctgtgctacgcggaatt
gaggatgagcttcagttttcccccttagagaataagcgctctgccacagcgactgatatc
cgacagtcagagtcgatatctcctagactgtctcatgccattcatgtaaatccaaaatat
ttagaagcacaacaacaatttaagcagtcaacttcggtgcatcaaccaataactcgtgga
aatcggcaaatgaatgatgtggaagaggatcaaataaatggtttaacatctaaaagttcg
cgaggatggcctgcaactaattcaaagctccagaagtctactatgctgtatgctgacgat
cttgatcaacaagaggcattttgttcacatactgggttgataaggccaagttcgccacat
cttttaagcaaacatccttccatactcaatacagaaggaccattagccaattcaagaaga
accatgtcaagatcaccacctcttgatgtgctccctagaaatgcatcccccaagagagct
ctggagaggccaccactatcgcattctgttctaggacctgaccccagaagattgcctgat
cgaaatggttggtttgaacggaagtgggcttttgaggatggtgcacaacggccttcgatg
agcatacttgatgaagaatatagaaagcaaagtgcaagggaacttattgatgcttatgga
aattctcaaggaaaagatgtcgatgaaaggcttcccaagatgcaacgtctagattcaaat
ggcatggcaggcagacctagtgcacaaaaatggctaacttcggaggaagaagagtatact
tgggaagatatgagtcctactttaactgatcgaaacagaaccagcgtgccctctttacct
ccccttggaaccctgagagctggatttcttgggccaaacagtggactactggaatctgat
attgtgaggcacagttggccaggccaggctcctcgaccagcaattgatgggccaccacta
aatctcgaagatagaattcctactaacgggcccgttgacagaactaataacaggagatat
ccaggcaattttggtgttcagaatggtgcctttttagattaccagagttctgaacatact
cttgatcctgggagaactaccatgccagttccaccttggcagcagactattggtcagccg
ttgcgggtacaagcgccccagcctgcatcaattctgaatagaatgccactgcctactgat
agtgaagtgccagtcaagaggttggccactggtggtacatatgatgcgctgaatgtagat
attccattgttggagaagcaaaggtcctcacctgctcatgctccaatggaatggcctctt
aatacacagtcactaactatacaaccaattccacctgataccaaacatcctagaggcgca
tcagatggtctagattctagaccatttattagccaagggtccagttcgtctgtttttgtt
ccacagcatcatgccttggatcggagaacaatgaatgctgatgatttagctcaaccatca
tatcagcatccagatttgttgtcattgagtcaacaaaatcagggcacagttttgggaaac
caaggtcaacctcatcacccgccgcaatttcatccccatcctcattctcaccttcaagag
acaattagaagctttgcccccagtatgtctgttgcacctccacaaaatatattccatgga
caaggaggtagcgcagctgcactcctgccaagttctttccctgtaccacctgcagtacca
ccctatggcttgcagtctatgcctggatttcctttgccatcgttaccttcaggaccacct
cctccatcgcagataggtccatcatcatcgcaagttgggggccctccacttgtctctgga
ttgttaagtaaccttatgcagcatggtataatctcattgcaaccacccagccaacctcag
gattctgtgggtgttgacttcaatgttgacctcaaggtacggaacgagtctgtcattaat
gctctgtatcaggatcttccgaggcaatgcaaaacttgtggccttcgttttaaatgccaa
gaagaacatcgtgctcacatggattggcatgttacgaaaaacagaaattcaaagaatcgt
aagcaaacttcacgtaaatattttgtcactgtgggtgaatggttaagagcagcagaaaca
gtaggaaacgatggtgttccttcttttgagcctgccgaaccagttgcagacgcaaaggaa
gagaaagaattggctgttcctgctgatgaggaccaaacaacatgtgctttatgtcaagag
ccatttgaagatttctacagtgatgaaactgaagagtggatgtacaaaggtgcagtttat
atgaatgcaccagatggaaatattggtggtctagaaaggtcgcagttgggacctattgtc
catgctaaatgtctatctgggccaaacaatacttag
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