KEGG T02163: Os08g0320100

Oryza sativa japonica (Japanese rice) (RAPDB): Os08g0320100

Entry

Os08g0320100      CDS       T02163

Name

(GenBank) RNA-binding region RNP-1 (RNA recognition motif) domain containing protein

K12741

heterogeneous nuclear ribonucleoprotein A1/A3

Organism

dosa Oryza sativa japonica (Japanese rice) (RAPDB)

Pathway

dosa03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:dosa00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Os08g0320100
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os08g0320100
   03041 Spliceosome [BR:dosa03041]
    Os08g0320100
Messenger RNA biogenesis [BR:dosa03019]
Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     Os08g0320100
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     Os08g0320100
Spliceosome [BR:dosa03041]
Common components
  Common spliceosomal components
   hnRNP proteins
    Os08g0320100

SSDB

Motif

Pfam:

RRM_1 RRM_7 RRM_PARP14_3 BRAP2 HSP90

Other DBs

NCBI-ProteinID:

BAF23439

RAP-DB:

Os08g0320100

UniProt:

Q6ZCL1

LinkDB

Position

AA seq 350 aa
MAGGKMKEHDGASPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGF
ITFADPAVVDRVIEDNHVINGKEVEIKRTIPKGAAPLKDFKTKKIFVGGLPSALKEDEFK
EFFSKFGKVVEHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKA
EPKKPSNPPHRSFDSEPRGRPHADGYDGLGNSYNYGGSFGPYRSPGSFGTRPGGYSSSYG
PGDYGSGYGAYGGALGGYRGESSLYSSRFGSTYGGSFGGGYAGGSYAGGLGGAYGRDAGG
FGGSSYGPSYDSSSGPGAGVGFGTGGLYGARGGYGSSGAGASGRYHPYAR

NT seq 1053 nt +upstreamnt +downstreamnt
atggccggcggcaagatgaaggagcacgacggcgccagcccagccaaaatcttcatcggc
gggctgcctaaggacaccaccatgggtactttcaaagaatactttgggaagtatggggag
atagttgatgccgtcataatgaaggaccgctttacccagaaacccagaggatttggattt
attacctttgcagatcctgctgttgttgacagagtgattgaggacaaccatgttattaat
ggaaaggaggttgaaattaagagaactattccaaagggtgctgcccccctaaaagatttc
aagacgaagaaaatatttgttggtggattaccatctgctttgaaagaagatgaattcaag
gagttcttttcgaaatttggaaaggtggtggaacatgaaatcattcgtgaccattcaact
aaccggtcacgaggatttggatttgtagtctttgatgcagaaaaaactgtagatgaatta
ttagctaagaaaggcaatatgattgatctaaatggttctcaggtggagatcaagaaggcc
gaaccaaagaaaccctctaacccacctcatcgttcatttgatagtgaacctaggggccgt
ccacatgcggatggttatgatggattgggcaactcttataattatggtggtagctttggc
ccctatagatcacctggaagttttggcactaggcctggtggttacagtagttcttatggc
cctggtgactatggtagtggctatggtgcttatggtggagcattaggaggatatcgtgga
gaatcatctctctattctagtcgctttggtagcacttatggaggaagctttggtggtggt
tatgctggtggcagttatgctggtggtttaggtggtgcatatgggcgtgatgctgggggt
tttggtggttctagctatggccctagttatgactcttcttcaggtcctggtgctggtgtt
ggctttggcacgggtggactctatggtgctagaggaggctatggtagcagtggtgctggt
gcttctggtcgttatcatccatatgcaaggtag

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