Oryza sativa japonica (Japanese rice) (RAPDB): Os08g0379000
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Entry
Os08g0379000 CDS
T02163
Name
(GenBank) Protein prenyltransferase domain containing protein
KO
K13217
pre-mRNA-processing factor 39
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dosa03041
]
Os08g0379000
Spliceosome [BR:
dosa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
Os08g0379000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-ProteinID:
BAF23602
RAP-DB:
Os08g0379000
UniProt:
Q6ZA37
LinkDB
All DBs
Position
8
Genome browser
AA seq
1161 aa
AA seq
DB search
MEEEEQPGAGAPAPEPLPSQLDILKNTIQSLRDSNRHDFDAWVSLIKAAEETSMYAAHKA
RLCTNKQVEEVYEQAVQAVPHSIDLWVSYCGFAMCTYEEPAHIRRLFERALSLVGKDYLC
YHLWDKYIEFEKSQKQLIQLATIYIDTLKFPTKKLRRYYESFRKLVTLMEHEAAGAERSS
ENLRTLEVIKAEDSEVDASIKISALLDEHSGHLRADAVKQYLLSGESLYQRSSKIDKEIS
CFEASIKRPFFHVKPLDDDQLENWHRYLDFVEKKGDFDWAVKLYERCLIPCANYSEFWIR
YAEFVDAKGGREIASYALGRASSYFVKGVPTFHMYYAMFKEQIGDAQGARSLFIEGSNNL
TSNFCANINRLANMEKRMGNTKAASEIYETAIQDAMQKNVKILPDLYTNFAQFKYAVNHN
ISEAKEVFVEGIKQAPCKALIKGFMQFMSTHGGPTEIPILDSVISNAVVPGSDISTVLSR
EDREDISLLFLEFVDLYGDVRDLRKAWARHSKLFPHNTRHMLQQYCNSENSLQENNKRRR
TENYIVSQDDSPKDAITLKQLSKSDTSLLVDKVVGLQVDKSTVDSGIGHTVEEQNILGNV
DVHHEVGDTAQECIDMTDSQHNLDKSGMQNQVSAHGTHESCEQNDQTTESHPSVCENAPH
AESFTCDSPSKSNSFSKISALDKANTIDVSASVDQGAICPRSDSPSVASLPKEETSPDPV
RISPELEEKKHDKIQGQLETKDDMSLSNANIEKSSDSPDATQHDREVSALSQEHVQSAQP
QQLPDCARPSSSEMATTPATTSSQFSPSTAVTSQAQLQHQIVSSQMHQSDKLSLAEQNTQ
QQGLAYEIPQNVQASSQSQAQIFAQPNQGDQQSLQTMQGYASQMWQYYQQQMYYLQAQHN
QQLQSLQQQQLPTEHLQQNFMQQVQQLNQQMVLWQQQVQQQQQQQQQQQQQQQQLQLQQH
ALPVQQQPDQKYSQLPSSGDTRHEQNKPQKLESQMDHQSELVQQQQVYFQQQQQMYLMQQ
QQMYQQQQQLQQQLLQQQLLQQQQYLSQMPQQQQNMTQQQQLFQQQQQQLFQQQQQQMVV
LQQQQQQQFIQQQMQQYLQQQTNQQGANSQSCELNPQDARNMKMEHGQQSEASQGDGSKL
RSGEQSELSYPSTPQSQHSNR
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaggagcagcccggggccggcgcgccggcgccggagcccttgccgtcgcag
ctagatattttgaagaacaccattcagtcattacgtgatagcaacagacacgactttgat
gcttgggtgtcattaattaaagctgctgaagaaacttcaatgtatgcagcccacaaagca
cgactatgcacaaacaaacaggtggaggaggtgtatgaacaagcagtccaagcagtgcct
cactctattgatctttgggtcagttattgtggatttgctatgtgcacatatgaagagcct
gctcatattagaagattattcgaaagggctttatctcttgttgggaaggattatttgtgc
tatcacctatgggacaagtacatagaatttgaaaaatctcaaaagcagttaattcagctt
gctacaatttatattgacaccctaaaatttcctacaaagaagttgcgtcggtactatgag
agcttcagaaagttggtaactttgatggaacatgaggctgctggtgctgaaaggtcatca
gaaaacttgcgtactttggaagtgataaaggctgaggattctgaagtggatgcttcaatt
aagatttctgccttacttgatgaacatagtgggcaccttagggctgatgcagtcaagcag
tacttactttctggggaaagtctctaccaaaggtccagtaaaatcgataaagaaatctct
tgcttcgaggcatccataaagagaccattttttcatgtcaagccacttgatgatgaccag
cttgaaaactggcaccggtatcttgactttgttgagaagaagggcgattttgactgggct
gtaaaactttatgagaggtgtttgattccttgtgctaattattctgaattttggatccgc
tatgcggaatttgtggatgctaagggtggccgagagattgcaagctatgctcttggtcga
gcgtcatcatattttgtgaagggagtcccgacattccacatgtattatgcgatgtttaaa
gagcaaattggtgatgcacaaggtgctcgttctctttttattgaaggaagcaataatctc
acttcgaatttctgtgcgaacattaataggctggcaaacatggagaaacgcatgggaaat
actaaagcagcttctgaaatatatgagactgcaattcaggatgccatgcagaagaacgtt
aaaattcttccagacttgtacacaaattttgcacaattcaaatatgcggtaaatcataac
attagtgaagctaaagaagtatttgttgaggggataaaacaagcaccctgtaaagctttg
atcaagggattcatgcagttcatgagtacacatggaggacccacagaaattcctatactt
gattctgttatttctaatgctgtagttcctggatctgatatatcaacagttttaagtcgt
gaagaccgtgaagatatttcattgctatttttggagtttgttgacctttacggggatgtt
agagatctcagaaaggcatgggctcggcacagtaaactattccctcacaacacaaggcac
atgttgcagcagtattgtaacagtgagaatagcctgcaagagaataacaagaggagaaga
actgaaaattatattgtttctcaagatgattctccaaaagacgcaataacattgaaacag
ttgtccaaaagtgatacttctctgctagttgataaagtggttgggttgcaagtggacaag
agcactgtggattcaggaataggacatacagtagaagagcagaacatattagggaatgtt
gatgtgcatcatgaggttggtgatacagctcaggaatgcattgacatgactgatagtcaa
cataacttggacaaatctggaatgcaaaaccaagtgagtgcacacggtactcatgagtca
tgcgaacaaaatgatcagacaacagaatctcatccatctgtatgtgagaatgctccacat
gcagaatcatttacttgtgattctccttccaaatctaattctttctccaagataagtgct
ctagacaaagctaacaccattgatgtatctgctagtgttgatcaaggagcaatatgccca
agatctgattctccatctgtggcaagcttacccaaggaagaaacttctcctgatccagtt
cgaatatctcctgagttggaggaaaagaagcatgataaaatccagggacaactggaaaca
aaggatgatatgtctctcagtaacgcaaatatagagaagtctagtgatagtccagatgca
actcaacatgatagggaagtatctgcactcagtcaagagcatgttcaatctgcacagcca
caacagctgccagactgtgcaagaccatccagctcagaaatggcaactacaccagctacc
acatcttcccaattttcacctagcaccgcagtgacatctcaagctcaacttcagcaccag
attgttagttctcaaatgcaccaatccgacaagctttctttggctgaacaaaatacgcag
cagcaagggcttgcttatgaaattcctcagaatgtccaggcatcctcgcagagtcaagct
caaatctttgcacagcctaaccagggagaccagcaaagcctccaaacgatgcaggggtat
gcatctcagatgtggcaatactaccagcaacagatgtactacctgcaggcccagcacaat
cagcagttgcagagcctgcaacagcagcagcttccaactgagcatctccagcaaaatttt
atgcagcaggtacaacagctgaaccaacagatggtactttggcagcaacaagtacagcag
cagcagcagcagcagcagcagcagcagcaacaacagcaacaactacagctacaacagcat
gcactgccagttcagcaacagcctgaccaaaaatacagtcagttaccttcctcgggggat
actagacatgaacaaaataaaccgcagaaacttgaatctcaaatggatcatcaaagcgaa
cttgtgcagcagcagcaagtttatttccagcaacagcagcaaatgtatcttatgcagcag
cagcagatgtatcaacagcagcaacagctgcagcagcagctacttcaacagcaattattg
cagcaacaacagtatctctcgcagatgccacagcagcaacaaaacatgacacagcaacag
cagctatttcaacagcaacagcagcaactatttcagcagcaacagcagcaaatggtagtt
ttgcagcagcagcagcagcaacagtttatccaacagcagatgcagcaataccttcaacag
caaacaaaccaacaaggggccaattctcagagttgtgaattaaatcctcaggatgcaagg
aacatgaagatggagcatggtcaacaatccgaagcatcacagggtgatggctctaagtta
cggagtggcgaacaatctgaattatcctatccgtccaccccacaatctcagcactcaaat
cgctaa
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integrated database retrieval system
