Oryza sativa japonica (Japanese rice) (RAPDB): Os08t0490300-01
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Entry
Os08t0490300-01 CDS
T02163
Symbol
Os08g0490300
Name
(RAP-DB) RNA recognition motif, glycine rich protein domain containing protein.
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015
mRNA surveillance pathway
dosa03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Os08t0490300-01 (Os08g0490300)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
Os08t0490300-01 (Os08g0490300)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os08t0490300-01 (Os08g0490300)
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
Os08t0490300-01 (Os08g0490300)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
RAP-DB:
Os08t0490300-01
LinkDB
All DBs
Position
chr08:complement(24240210..24242021)
AA seq
603 aa
AA seq
DB search
MEPDGDAAFHRNEAISAVQDVDQYYGDDDDFDDLYNDVNVGDGFLHNSSSSQPPPSQQLP
PPSLPPPLPQKQPPSQQLPPPPQQQQPPPQHSLPPPPPLPQAPPPQQQKVHIPGVAAPAP
NHPPSQPNLPPPAAPAPLPPQQHQIQQGGGDGFHRPGGNYGGGPIVVGNGGPAVVGGDGP
GGTTLFVGELHWWTTDADLEAELIKYGPVKEVRFFDEKASGKSKGYCQVDFYDPAVATAC
KEAMNGHLFNGRPCVVAFASPNSVRRMGEAQVKNQQSMSAQTSSMQPKGGRGGGGAGSPQ
VGGNYGGGRGGGPGGGAGGGGGNWGRGGGGMGRGPAGNMRNRMGGPAGGRGIMGNGGMVA
PPPPMLPPGGMMGQAFDPTGYGAMGRMGAGFGGFPGAPGAGPFPGLMQPFPPVVAPHVNP
AFFGRGGMGAGGVGMWPDPNMGGWGGEEQSSYGDDAASDQQYGEGGSHGKERAERPPDRE
WSGASERRREREKDIPPAQEWPDRKHRDERDMGRERDRDYDRERERDRDRERERDRDRER
DRERDRERERDRHRDDRDRYGDYHRHRDRDSERNEDWDRGRSSGVRSRSREVDHSKRRRM
TPE
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggagcccgacggcgacgccgcgttccaccgtaacgaggccatctccgccgtccaggac
gtggaccagtactacggcgacgacgacgacttcgacgacctctacaacgacgtcaacgtc
ggcgacggcttcctccacaactcctcctcctcccagcccccgccttcccagcaactccct
ccgccgtcgctgccgccgccgctgccacagaagcagccaccgtcccagcagctccctccg
cctccccagcagcagcagccaccgccccagcactcgctgcccccgccgccgccgctcccg
caggcgccgcctccgcagcagcagaaggtgcacatccctggcgtggccgccccggctccg
aatcaccctccatctcagcccaatctcccgccgccggccgccccggcgccgctgccgcct
cagcaacaccagatccagcaaggcggtggcgacggattccaccgcccgggaggcaattat
ggcggtggtcccatcgtggtcgggaacggcgggccagctgttgttgggggtgatggtcct
ggcggcacgacgctgttcgtcggggagctccactggtggacgaccgacgccgatcttgag
gcggagctcatcaagtatgggccggtgaaggaagtgagattctttgatgagaaggcgagt
ggcaagtccaagggttactgccaggttgacttctatgatcctgctgttgccactgcctgc
aaggaggcaatgaacggccacctgttcaatggtcgtccgtgcgttgtggcctttgcctcg
ccgaattccgtccgtcgaatgggcgaggcgcaggttaagaaccagcaatccatgtctgca
cagacatcgtctatgcagcccaagggtgggagaggcggcggcggtgctggaagccctcag
gttggtggtaattatggtggtggccgcggaggtggacctggtggtggtgcaggcggaggt
ggcggaaattgggggagaggtggtggagggatggggagaggacctgctgggaatatgagg
aatcggatgggaggaccagcaggcggccgagggatcatgggaaatggtggaatggttgca
ccaccacctccaatgctgcctccaggcggaatgatggggcaggcttttgatcctactggt
tatggtgcaatgggaaggatgggtgctgggtttggtggattccctggtgcaccaggggca
gggccattccctgggttgatgcagccattcccacctgtggttgcaccacatgttaatcct
gctttctttggaaggggtgggatgggtgctggcggagttggtatgtggcctgaccccaac
atggggggatggggtggggaggaacaatcaagttatggggatgatgcagcgtctgatcag
cagtatggggaagggggaagccatggtaaggagagggccgagaggccacctgatagggag
tggtctggtgcatcggagaggaggcgggagagggagaaggatatacccccagcacaggag
tggccagataggaagcaccgggatgaacgagacatgggccgagagagagatcgtgactat
gacagagagagggagagagatcgtgatagggagagagaaagagaccgtgacagggagagg
gacagagagagggacagggaaagggagagggataggcacagggatgacagagaccgctat
ggcgattatcatcggcacagggaccgtgattcagagcgtaatgaagattgggacagagga
agatcatctggtgtgcgcagcaggtctagggaggttgatcattctaagcgtaggcggatg
acgcctgagtag
DBGET
integrated database retrieval system
