KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os09g0272900
Entry
Os09g0272900      CDS       T02163                                 
Name
(GenBank) Similar to Skp1 (Fragment)
  KO
K03094  S-phase kinase-associated protein 1
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03083  Polycomb repressive complex
dosa04120  Ubiquitin mediated proteolysis
dosa04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    Os09g0272900
   04120 Ubiquitin mediated proteolysis
    Os09g0272900
  09126 Chromosome
   03083 Polycomb repressive complex
    Os09g0272900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:dosa04131]
    Os09g0272900
   04121 Ubiquitin system [BR:dosa04121]
    Os09g0272900
   03036 Chromosome and associated proteins [BR:dosa03036]
    Os09g0272900
Membrane trafficking [BR:dosa04131]
 Endosome - Lysosome transport
  Acidification regulators
   RAVE complex
    Os09g0272900
Ubiquitin system [BR:dosa04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Adaptor protein
     Os09g0272900
   Cul7 complex
     Os09g0272900
Chromosome and associated proteins [BR:dosa03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     Os09g0272900
  Centromeric chromatin formation proteins
   Kinetochore proteins
    CBF3 complex
     Os09g0272900
SSDB
Motif
Pfam: Skp1 Skp1_POZ DUF5869 SNaCT7
Other DBs
NCBI-ProteinID: BAF24656
RAP-DB: Os09g0272900
LinkDB
Position
9:complement(6037570..6057022)
AA seq 198 aa
MITLSSPVMCFIHASSVFDRSMAAPAAPQETNAAAGEMVTLISSDGARFEVPEAAVRLSQ
TVLDEMKKDDYNAINGIPLPNVAGDVLAKVVEYCTKHASAAAAAINADTAKTSKEEEELM
MKSFDDEFILVDNHMLYSLLTAADAMRIQGLMDLACQRLADMIKGKTSEQMRQTLGITND
FTPEEEEEFRREDEEQWL
NT seq 597 nt   +upstreamnt  +downstreamnt
atgattacgctgagcagtcctgtgatgtgtttcatccatgcgtcgtccgtgttcgaccga
tcaatggcggcacccgcagcaccgcaggagaccaacgccgcggccggtgagatggtcacg
ctgatcagctcggacggagctcgcttcgaggtgccggaggcggcggtgaggctgtcgcag
acggtgctcgacgagatgaagaaggacgactacaacgccatcaacggcatccctctcccc
aacgtcgccggcgacgtcctcgccaaggtggtcgagtactgcaccaagcacgcctccgcc
gccgccgccgccatcaacgccgacacggcgaagacgagcaaggaggaggaggagctgatg
atgaagagcttcgacgacgagttcatcctggtggacaaccacatgctgtacagcttgctc
acggcggcggacgccatgcgcatccaggggctgatggacctggcatgccagcgattggcg
gacatgatcaagggcaagacgtcggagcagatgaggcagacgttggggatcaccaacgac
ttcacgccggaggaagaagaggagtttcgccgggaggacgaggaacaatggctctga

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