Oryza sativa japonica (Japanese rice) (RAPDB): Os09g0536000
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Entry
Os09g0536000 CDS
T02163
Name
(GenBank) Exodeoxyribonuclease III xth family protein
KO
K10772
AP endonuclease 2 [EC:
3.1.11.2
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dosa03400
]
Os09g0536000
Enzymes [BR:
dosa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
Os09g0536000
DNA repair and recombination proteins [BR:
dosa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Os09g0536000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Zn_ribbon_GRF
Motif
Other DBs
NCBI-ProteinID:
BAF25697
RAP-DB:
Os09g0536000
UniProt:
Q0J018
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Position
9
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AA seq
619 aa
AA seq
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MVKIVTYNVNGLRPRVAQHGSLRRLLDALDADIICFQETKLSRQDLSGDVIMAEGYEAFI
SCNRSSKGRGAYSGVATFCRVTSAFSSQEVALPVAAEEGFTGLQETAKNSETIGDFVLVT
PVEEEGLGEVTKEELLKVDNEGRCVITDHGHFVLFNIYGPAVEEDDIERVRFKLLFYKIL
QRRWEHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSMLREHGGPFFDAF
RSKHPERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDHSIFPCHVEECEI
MDHFRRGNSENMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNTPSSAARYLPEIRGR
QQSIVSFLRKGMIYEHKDAMSMDRADESCCGGGLERKAIYKEEPPTDIAKFSKGNDLHSV
IKRKIRDQLLNEGSSGNSHNSTAALLATQSRKASFSCSKAVSNKKNKHNLSSQPTIKSFF
QQPKSKPGDSSTNSIVTPPDTLHGMDELHDPKNDCLPESIQCTTPATEDQGNSDVPCSLS
TDKCNEATLEWQRIQQRMKMTLPLCKGHHEPCIPRSVKKGSNIGRLFYVCARAQGPASNQ
EANCGHFQWATVKSKEKRR
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagatagtgacgtacaacgtgaacgggctgcggccgcgggtggcgcagcatggc
tcgctccgccgcctcctcgacgccctcgacgccgacatcatctgcttccaggagacaaaa
ttgtcgaggcaggacttgtcgggggatgtcatcatggctgagggatacgaggcttttatt
tcatgcaatcgttcatcgaaagggcgtggagcttactctggtgttgccacgttttgccgg
gtaacatcagccttttccagtcaagaggttgctttaccagtagcagctgaggaaggcttt
actggattgcaagagactgcaaagaacagtgaaactattggggattttgttcttgtaact
cctgtggaagaggaaggtcttggtgaagtaacaaaagaagagctgctcaaggtggacaat
gaaggacgttgtgtaattacagatcatggacattttgttctttttaatatatatggccca
gctgttgaagaagatgatatagaacgagttcgctttaagctactattttacaagatacta
cagagaagatgggaacatttgttggctcttgggaaaagagttttcgttgttggtgatttg
aatattgcaccttcttcaatagataggtgtgatgcccaacctggattcgagaagcaaacg
tttcggaaatggttgagatccatgctgagagaacatggaggtccattttttgatgctttc
cgatcaaaacaccctgaaagagtgggagcttatacctgttttaatcaaaaagttggagct
gaagtatacaattatggttctagaattgatcacattctcatttctggtgcctgcttccat
cactgcggttctgtggatgaccacagcatctttccctgccatgtggaagaatgtgaaatt
atggatcatttcagaagagggaatagcgaaaatatgtcaatgtggaaaggagggagaagt
agtaagctagaaggatcagatcatattccagtttatattgtgctgaatgagatacctgaa
cttccagttcataacactccttcatcagctgctagatatcttcctgaaatccgtggacgg
caacagagcatagtatcattcctaaggaaaggcatgatttatgaacataaagatgccatg
tccatggatagagcagatgaaagctgctgtggtggtggcttggaaaggaaagctatatat
aaggaagaaccaccaactgatatagccaaattttccaaaggtaacgaccttcatagtgtc
atcaagcggaaaattcgtgatcaattgttaaatgaaggttcaagtggcaactcccataat
agcactgcagcattactggcaacacaaagtagaaaagcttccttttcttgcagcaaggct
gtgtccaacaagaaaaacaaacataacttgtcttcccaacctacgatcaagtcatttttt
caacaaccaaagtcaaagccaggagatagcagtaccaatagcatagttactccaccagat
actttgcatggtatggatgaattacatgatccaaagaatgactgtctgccagaaagcatc
cagtgtacaactccagcaaccgaagatcagggtaactcagatgtaccctgctcgctttca
acagataaatgcaatgaagcaacactggagtggcaaagaatacagcagagaatgaagatg
accctaccactttgcaaaggacaccatgaaccttgcattccaaggtctgtgaagaaaggc
tctaatattggtcgcctattctatgtctgtgcccgtgctcagggacctgcatcaaaccaa
gaagcaaattgtggtcactttcagtgggccactgttaagtctaaagagaaacgccggtga
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