Oryza sativa japonica (Japanese rice) (RAPDB): Os09g0540600
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Entry
Os09g0540600 CDS
T02163
Name
(GenBank) Similar to WD-40 repeat protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03082
ATP-dependent chromatin remodeling
dosa03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
Os09g0540600
03083 Polycomb repressive complex
Os09g0540600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dosa03036
]
Os09g0540600
Chromosome and associated proteins [BR:
dosa03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
Os09g0540600
Histone modification proteins
HAT complexes
HATB complex
Os09g0540600
HDAC complexes
Sin3A-HDAC complex
Os09g0540600
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
Os09g0540600
PRC2.2
Os09g0540600
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
Os09g0540600
Heterochromatin formation proteins
Other heterochromatin formation proteins
Os09g0540600
Chromatin remodeling factors
NuRD complex
Os09g0540600
NuRF complex
Os09g0540600
NuRF complex (fruit fly)
Os09g0540600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD_LRWD1
WD40_RFWD3
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-ProteinID:
BAF25724
RAP-DB:
Os09g0540600
UniProt:
Q0IZZ1
LinkDB
All DBs
Position
9
Genome browser
AA seq
410 aa
AA seq
DB search
MDGGSSTAARSSAAEMEEHQNWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARS
HRLVLGTHTSDETPNHLLLADAALPLPPRLAAAAAAAGGAVPAPSVSISRSVPHKGEVNR
ARCMPQRPYTVATKTCVDEVHVYHLGDGGEKGGADVVLRGHEAEGYGLAWSPMKEGLLLS
GSYDKKICLWDLAAGSGASSLDAHHVFEAHDDVVEDVAWHLKDENLFGSAGDDCKLMMWD
LRTNKPGQSIVAHQKEVNSLSFNPFNEWILASASGDATIKLFDLRKLSRSLHVFDSHDSC
RGEVFQVEWNPNLETVLASSAADKRVMIWDVSRIGDEQAEEDANDGPPELLFVHGGHTAK
ISELSWNPTQKWVMASVAEDNILQIWEMAESIYCDDNYLHDNDDDSCPAT
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgggtcctccacggcggcgaggtcgtcggcggcggagatggaggagcaccag
aactggaagaagaacgcgccggtgctctacgacctcgtcatctcccagccgctcgagtgg
ccgtcgctcaccgtccagtggctcccctcccactcccggtcgccgggctccgcccgctcc
caccgcctcgtcctcggcacccacacctccgacgagacgcccaaccacctcctactcgcc
gacgccgccctcccgctcccgccccgcctggcggcggcggccgcggcggcgggcggtgcc
gtcccggccccgtccgtgtccatctcccgctcggtgccgcacaagggcgaggtcaaccgc
gcccgctgcatgccgcagaggccgtacacggtggctaccaagacctgcgtggatgaggtg
cacgtgtaccatcttggcgacggcggcgagaagggcggcgccgatgtggtgctcaggggg
catgaagcggaggggtatgggctggcgtggagtccgatgaaggaggggttgctgctgagc
ggctcgtatgataagaagatttgcctttgggatctcgctgctgggagtggagcttcgtct
ctggatgcacatcatgtgttcgaggctcatgacgatgttgttgaagatgttgcatggcac
ctgaaagatgaaaacctatttggatctgctggggatgactgcaagctgatgatgtgggac
ttgcgtactaataaaccaggacaatctatagtagcacaccaaaaagaagtaaactctttg
tccttcaatccgtttaatgagtggatcttggcttcagcatctggagatgcaactattaag
ctatttgacttgcgaaaactgtcaagaagcctgcatgtattcgacagccatgactcctgt
aggggagaggtttttcaggttgagtggaatcctaatttggagactgtgttagcatcctca
gctgcagacaaaagggtgatgatatgggatgttagcaggatcggagacgagcaggcagag
gaggatgcaaacgatggtccaccggagctgctgttcgtgcatggaggccacacagccaag
atatcagagttgtcgtggaaccccacccagaaatgggtcatggccagcgtggccgaggat
aacatcctgcagatctgggagatggcagaaagcatatactgtgatgacaattatctccat
gacaatgatgatgactcgtgcccagccacataa
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