Oryza sativa japonica (Japanese rice) (RAPDB): Os09g0566100
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Entry
Os09g0566100 CDS
T02163
Name
(GenBank) ENTH/VHS domain containing protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Os09g0566100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dosa03021
]
Os09g0566100
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os09g0566100
Transcription machinery [BR:
dosa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Os09g0566100
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
Os09g0566100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2_11
Pcf11_C
Motif
Other DBs
NCBI-ProteinID:
BAF25867
RAP-DB:
Os09g0566100
UniProt:
A0A0P0XQZ9
LinkDB
All DBs
Position
9
Genome browser
AA seq
1069 aa
AA seq
DB search
MRASAAPMETSASARRSAAPDPKKPRLAQHPAPRDPRSYPAAANGNAPAVDQAQVDELVA
QYRTALGELTFNSKPIITNLTIIAGENLHAAKPIASLICANILEVPSEQKLPSLYLLDSI
VKNIGKDYVKHFSARLPEVFCKAYKQVDSSIHNSMRHLFGTWKGVFSPTSLQVIEKELGF
QSSTNGSSGAAPSKPDSQSNRPSHSIHVNPKYLEARQQLQQPNKGQGILGAGAKTTTISD
SGDDIERTSRTAVDRGAGRRLDALNPRTNVQRAQRDPFSNPIHEKQDRDMRVLGFSNISQ
QAVVGTGLVRAKPKGQDGSGGPYYTAGVGSSEEQFDRRSNFYANKDVRPSGSVRLDGALL
PTPVSNSDRIGRPSSNKSWKNSEEEEYMWDDVRSQGADYGGTSSTRKREWIPDDGNVGSF
QRVKWAEAGGPLDPDQHKLDSFQRFGNATGQDRRITPYMDHEEYLHGKHEVEPRIDREML
PEGQPFSSSRGSSLWLSHEKPLPDIVSDPRISAFSNQPADRPTIYAGTLSTSITSSVPVG
LSAAYAGRSSLESAATRSTETIGQQKNRYWSTSSPPVQSPSASFARQSSPSPVELDYSSK
PFSQLGQNSLEDYNQRTHALAQNLALSQGRPNLLGAPSHASQQIEKHPSLLQSKPHLRTL
DQPQANFSPENSSSVFKSSIQLPISVGVGHRQPEEVSLSSDSTLMSSDHLSASSLLAGLI
KSGFKPNDPNDLASLRAQPPLPSGPPPHVSTSFSAASSSLHLPASDTLKSQAPNSLRPPL
PPGLPLSSPFVCPTTQTSEKAAPLSSLLSSLVAKGLISSPSADSTVAIPQQPCKSELNTP
DDTASAPSLPFVQPSVKKETSNQNSSAPSKVLVHQPVEIKKEPAEIKMVDLIGFDFKPEM
LRKYHAHVISTLFDDQSHQCNTCGLRFSLEEELSVHTACHGSKQSETRKTGIAPEKWYPS
KNNWVDRSHEVQNSALESASSVADLSSEEEVCEFMVPADESQIICALCGESFDDIYSIEK
DNWMYKDAVYFDSSKTEGSSGDSAESKERVPIVHARCMSISSNDGMEVD
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcctccgccgcccccatggagacctccgcctccgcccgcagatccgccgccccc
gaccccaagaagcctcgcctcgcccagcaccccgcccccagggatcccagatcttacccc
gctgccgccaatggcaacgcccccgccgtcgaccaggcgcaggtggacgagctcgtcgcg
cagtaccggaccgccctcggggagctcaccttcaactccaagcccatcatcaccaacctc
accatcatcgccggcgagaacctccacgccgccaagcccatcgcctctctcatctgcgcc
aacatcctcgaggttccaagtgaacagaagctaccatctctgtatctacttgacagtatt
gtcaaaaatattggaaaagattatgttaaacatttttctgcaagattacccgaggtgttc
tgcaaagcatataaacaggttgattcttccatacacaatagcatgagacacttatttgga
acatggaaaggagtgttttccccaacttcactccaagtgattgagaaggaacttggcttt
caatcatctactaatggatcatcaggcgctgcaccatcaaagcctgattctcaatccaat
cgtccatcccacagcattcatgtgaacccaaaatatttggaagcaaggcagcagctccag
caaccaaataagggacaggggatactgggagctggggccaagactactacaatttccgat
tctggtgatgatattgagaggactagcaggacagctgttgatagaggtgcagggcggcgg
ctggatgctttgaaccctaggactaatgtacagcgggcacaaagggacccttttagcaat
cctattcatgaaaagcaagatagagatatgagggtccttggattctccaacatttcgcag
caggctgttgtgggaactggtcttgttcgtgcaaaacctaaaggccaagatggaagtggc
ggaccatattatactgctggagttggttcttctgaagaacagtttgacaggcgcagcaat
ttttatgcaaacaaggatgttagaccatcaggatctgtacgtttagatggtgcacttttg
ccaactcctgttagtaattctgataggattggtaggccgtcatccaacaaaagctggaag
aattctgaggaagaagagtacatgtgggatgatgtacgttctcaaggagcagattatgga
ggtaccagttcaacaagaaaaagagaatggatacctgatgatggaaatgttggaagcttt
caaagggttaaatgggcagaggcgggaggacctttggaccctgaccaacacaaattagat
agcttccaaagatttggaaatgcgacgggtcaagatagaagaattacaccatatatggat
catgaagagtaccttcatggtaagcacgaagtggaaccaagaattgatagggaaatgctc
ccggaaggacagccgttctcgtcatctcgtggttcctctctctggttatcccatgaaaaa
cctctcccagacattgtgtcagatcctaggatatcagcgttttccaatcagccagcggac
aggcctaccatttatgctggtaccttgtcaacaagtatcacttcatctgtacctgttggg
ttgtcagcagcctatgctggacgatcaagcctagaaagtgcagcaacaagatcaactgag
actataggacagcaaaagaatagatattggtcaacttcctcaccacctgtacagtcacct
tctgcatcatttgcacgccagagttcccctagtcctgtagagcttgattactcttccaaa
ccattctcacagttgggtcaaaattctctggaagactataaccaaagaactcatgccttg
gctcaaaaccttgcactttctcagggcagacctaatctgctgggtgctccttcacatgcc
tcccagcagattgaaaagcacccttccttgctgcagtcaaagccacatctcaggacactt
gatcaaccgcaggcaaacttttcacctgaaaattcatcttcagtatttaaatcttcaatc
cagctgcctatttctgttggcgtggggcatcggcagcctgaagaagtatctctgtctagt
gattccactcttatgagctcagatcatttaagtgctagcagtttgttggctggccttata
aagagtggattcaaaccgaatgaccccaacgatcttgccagtttgagggcacaacctcct
cttccaagtgggccacctcctcatgtttcgacatctttttcagctgcttcctcatccctg
caccttccagctagtgatactctgaagtctcaggcgccaaactctctgcgcccacctttg
ccccctgggttgccactttcgtcgccgtttgtgtgcccgacaacacagacctcggagaaa
gctgcaccactctctagtcttctcagttccctggttgcaaagggattgatttcttcgcct
tctgcagattcaactgtagcgatcccacaacagccctgtaaatcagaactgaacacacca
gatgacactgcttcagctccatctctgccttttgtccagccttcagttaaaaaggaaaca
tccaatcaaaactcatctgccccatctaaggtgctggtgcatcaacctgttgaaatcaag
aaggaacctgcagaaatcaagatggtagaccttattggctttgacttcaagcctgagatg
ctccgcaagtaccatgcacatgtgatcagcaccctctttgatgaccaaagtcatcaatgt
aatacatgtggtctaagattcagtcttgaagaagagctctctgtgcacactgcgtgccat
ggatcgaagcaaagtgagactagaaagactggtatcgcacctgaaaaatggtaccctagc
aaaaataattgggtcgatagatcacatgaagtgcagaacagcgccctggagtctgcttct
tctgttgcagatttgagctctgaagaggaagtttgtgaattcatggttcctgcagatgag
agtcagattatctgtgcactctgtggagagtcatttgatgacatttattccattgagaag
gataactggatgtacaaggatgcggtctattttgattcttcgaagacagaaggcagcagt
ggcgacagtgctgagagtaaagagcgtgtacccatagtgcatgcaagatgtatgtcgata
agctcaaatgatggcatggaggttgattag
DBGET
integrated database retrieval system
