Oryza sativa japonica (Japanese rice) (RAPDB): Os10g0115600
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Entry
Os10g0115600 CDS
T02163
Name
(GenBank) Similar to U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70) (U1-70K). Splice isoform Short
KO
K11093
U1 small nuclear ribonucleoprotein 70kDa
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os10g0115600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dosa03041
]
Os10g0115600
Spliceosome [BR:
dosa03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
Os10g0115600
Complex B
Os10g0115600
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
U1snRNP70_N
RRM_1
Motif
Other DBs
NCBI-ProteinID:
BAF25964
RAP-DB:
Os10g0115600
UniProt:
Q33BE1
Q0IZA1
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All DBs
Position
10
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AA seq
463 aa
AA seq
DB search
MGDYGSGMMRGNPDGGGMQSRTKGQRVNVQQLKLMGQGHPTGLTPNLLKLFEPRPPLDFK
PPVEKRKLPAYTGMAQFVSQFAEPGDPEYAPPVPTCETKAEKKDRIRKSKLDQGAAKVAE
ELQKYDPQSDPNATGDPYKTLFVARLNYETSEHRVKREFEAYGPIKRVRLVTDKETNKPR
GYAFIEYMHTRDMKNAYKQADGRKVDNRRVLVDVERGRTVPNWRPRRLGGGLGSSRIGGE
NAEQKLSTRDQQHAGRPRSEEPRRDERRADRDREKSRERPRERDRDERTRERSHDRTRER
DSKEDRHHHRDRDRTRDRERGRDRERDHGRDRDRERDRRDRDRDRDRGRDYERDRDRGHD
RHRERGRDRERDYERASHERDRGHMHERDAEFANGEPKHDQEYGYNYEQHKSHDAYETER
SKRHEHEYYQMQPNNTEPEGPEEGEAYDEGDYQYHQAADEHNN
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggcgactacggcagcgggatgatgcgggggaacccggacggcggcgggatgcagtcc
cgcaccaagggccagcgcgtcaacgtgcagcagctcaagctgatggggcagggacacccg
acgggcctcacccccaacctgctcaagctcttcgagccccgcccgccgctcgacttcaag
ccgcccgtcgagaagcgcaagttgccggcctacactgggatggcgcagttcgtgtcgcag
tttgcggagcccggtgaccctgagtacgcgccacccgtccccacatgcgagaccaaggct
gaaaagaaggataggatccgcaaaagtaagcttgaccaaggtgcggctaaggtggctgaa
gagcttcagaaatatgacccacagagtgaccccaatgccactggagatccatacaaaaca
ctctttgttgcaagacttaactatgagacgtctgagcatagggtcaagcgggagtttgaa
gcttatgggcctattaaaagggtacggcttgtgaccgacaaggaaacaaataaacctaga
ggatatgcattcatcgagtatatgcacacccgggacatgaaaaatgcttacaagcaagca
gatgggagaaaagtggacaataggagggtgctagttgatgtggagcgtggtagaactgtt
ccaaattggcgtcccaggagattgggtggtggacttggatcaagcagaattggtggtgaa
aatgctgaacagaagctctccactagggatcagcagcacgctggacgcccaagatcggag
gagcctaggagagatgagcgtcgtgcagatagggaccgcgagaagtctcgtgaaaggcca
cgggaaagagatcgtgatgagagaactcgtgaacgatcccatgaccgtactcgcgagcgt
gattcaaaagaagatagacaccaccatagggatcgggacaggactcgggacagggaacga
ggaagggaccgggagagagatcatggtcgtgaccgtgaccgtgagcgtgatcgtcgtgat
agagatagggacagggatcgtggtcgggattatgagagagaccgtgaccgtggtcatgat
cgccatcgtgagagaggcagggaccgtgagagagattacgagcgtgcaagtcatgaacgg
gaccgtggtcacatgcatgagagagatgctgaatttgccaacggtgagccaaaacatgat
caggaatatggctataactatgagcaacacaaaagccatgatgcttatgagacggagcgc
tcaaagcgacatgagcatgagtactatcagatgcaacctaacaacacagaacctgaaggc
cctgaagagggcgaggcatatgatgaaggtgactaccagtatcaccaagctgctgatgag
cacaataactga
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