Oryza sativa japonica (Japanese rice) (RAPDB): Os10g0546300
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Entry
Os10g0546300 CDS
T02163
Name
(GenBank) Conserved hypothetical protein
KO
K23288
syndetin
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dosa04131
]
Os10g0546300
Membrane trafficking [BR:
dosa04131
]
Protein recycling
Others
EARP complex
Os10g0546300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-ProteinID:
BAF27129
RAP-DB:
Os10g0546300
UniProt:
Q336V4
Q0IVY6
LinkDB
All DBs
Position
10
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AA seq
1074 aa
AA seq
DB search
MRGDAPAASSSSSASSPPSLFGGGDGGGELFGSAPGPLVFLPLLLIQGGGMDLSRVGEKL
LSSVRSARSLGLLPPTPPPPASRPEVPARAAAAAAAARAIAGLPPHEKISLPSNSEDLVS
IYGSNPQGHAVDELEEVFFQEEFDPIKYILQSIPAEGDSSYFDKQSTLRLAQLDKIAERL
SHHVMGHHEEMVKGMQLVMELEQDLKVANVICMNGRRHVSSSKNEVSRDLVVNVKSKKKQ
ALLDVLPILTELRNAQDMQMELESFVEKENYFQAFQLLPEYLQILENYSGLSSVQEMGRG
IEAWLARTIQKLDTHLLGVCQTFHEESYLTVIDAYALMGDIGGMAEKMQSFFLQEVLSQT
HYVLKEMLEEEVGNNTQRNRFTYSDLCAQVPEPKLRPCLLRTFQSLFSLMCSYYTIMSFC
PGVKSIESEGENSLTGRNNTSQSADESLGDSGRGHAAEMSDRTSSSDVSNPDTSTSGTDS
PFYQLRTDAAKLVAHAFERGRRNLWQLATSRLSVLLSSSVVFSTSTYQFLKNYEDLTIFI
LAGEAFCGFEASEFRQKLKGICLNYSVAFHRQNIYALKMVLERESWTIMSAEASRIISLA
GLTGDGAALISPTSRISTLPIHGSTMSDTGKEKNGFAAWTKIENPFFYKVENGTTESPKS
NMMFNSVDNSSAHGSTNNGNGNKAPLDEENEDLLADFIDEDSQLPSRLAKTKIVKGNSSH
WKDGDISSQTGSSLSLLRMMDKYARLMQKLEIVNVELFKGICQLFGIFYHYIYETFGNQD
RGQSGKSLPDHQSFRLRVALSKITQDSDQWIKPQSISYSPSSPVSMDVMPTAPPSSMFTL
YGLKERCAAAETISLVARVLNRSRAHLHSVLSQSNTSILEEFFGTMVDSVPDLAEHIHRT
SARMLLHINGYPDKIANAKWEVKELGMEHNGYVDLLLGEFKHYKTRLDHGGISKELQDLL
LEYGIDSIAEVLVEGLSRVKRCTDEGRALMSLDLQVLINGLLHIVSANVRPKLQIVDTFI
KAYYLPETEYVHWARSHPEYSKSQVVGLVNLVATMKGWKRKTRLETIERIEAGP
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggcgacgcgcccgccgcctcctcctcgtcatcggcatcgtcacccccctcgctc
ttcggcggcggagacggcggcggcgagctgttcgggtccgcgcctgggccgctcgtcttc
ctgcccctgctcctgatccagggcggcggcatggacctctcccgcgtcggcgagaagctc
ctcagctccgtccgctccgcgcgctccctcggcctcctccctcccaccccaccgccgccc
gcctcccgccccgaggttccagctagagctgcggcggcagcggcggccgcacgtgcgatc
gctgggctgccaccgcacgagaagatcagcctgccttcgaattcggaggacttggtctcc
atctacgggagcaacccgcaggggcatgccgtggatgagctcgaggaggtgttctttcag
gaggagttcgacccaataaagtacattctgcaaagtatccctgcagagggtgattccagc
tatttcgataagcagtctactttgagattagcgcagctcgacaaaattgcagaacgacta
tcacatcatgttatgggtcatcatgaagaaatggtgaaggggatgcagttagtgatggag
ttagaacaagatttaaaggttgcaaatgtgatctgcatgaatggacggaggcatgtatcc
tcttcaaagaatgaggtatcgagggatctggttgtcaatgtaaaatcaaagaagaaacaa
gctttgctggatgttcttccaattcttacagaacttcgtaatgcacaagacatgcagatg
gaacttgaaagttttgtggagaaagaaaactattttcaggcgtttcaattattgcctgaa
tatttgcaaatcttggagaactattcaggcctttcttctgtacaagaaatggggcgtggg
attgaggcatggttggcacgaacaatccaaaaattagacacccatttactaggggtttgt
cagaccttccatgaggaaagctatctaactgttattgatgcctatgcgctgatgggtgac
atcggtggcatggctgaaaagatgcagagtttctttttgcaagaagtactctctcagact
cattatgtcctgaaagaaatgttggaagaggaggttggaaataatacgcagagaaataga
tttacatatagtgatctttgtgctcaagttcctgagcccaagctccggccctgcttatta
agaacctttcagagtttgttttcattgatgtgctcatattatactataatgagcttttgc
ccaggagtaaagagtatcgagtccgagggcgaaaactctctgacaggaaggaacaacaca
tcccagagtgcagatgaatcattaggtgattcaggtagaggtcatgcagctgaaatgagt
gacaggacatcatcttctgatgtcagcaatcctgatactagcacatcaggaacagattca
ccattctatcagctaaggacagatgctgcaaaacttgttgcacatgcatttgaaagaggg
cggagaaatctttggcaactagcaacaagtcgcttatctgtattactgtcctcttcagtt
gttttctcaactagcacgtatcaatttttgaagaactacgaagatctcaccatttttatc
ttggctggtgaagcattttgtgggtttgaagcgagcgagttccggcaaaagttgaagggt
atctgtttgaactattcggtggcctttcaccggcaaaatatctatgcactaaagatggta
ctggaaagggaatcttggacaataatgtctgctgaagcatcacggataattagtttagca
ggccttaccggtgatggtgctgctctaatctcaccaaccagtcgtatctccaccttgcca
atacatggttctactatgtctgatacagggaaggaaaaaaatggatttgctgcttggact
aagattgaaaacccatttttttacaaggtagaaaatggcaccacggaatccccgaagtcc
aatatgatgttcaactcagttgacaatagttctgcccatggaagtactaacaatggcaat
ggaaataaagcacctcttgacgaagagaatgaagaccttcttgcagattttattgatgaa
gatagtcagttgcctagtaggttagcaaaaacaaaaattgtgaaaggcaattcttcccat
tggaaggatggggacatttcatcacagacaggatcatcgctttctttattaaggatgatg
gataaatatgccagattaatgcaaaagctggaaattgtcaatgttgagctttttaagggt
atatgccaactgtttggcatcttttatcactacatatacgagacatttgggaaccaggac
aggggtcaaagtggcaagtctttacctgatcatcaatcgtttcggcttagagtggctttg
tcaaaaataacacaagactctgaccagtggatcaaaccacagagtatttcatattcacct
tcatcacccgtatcaatggatgtgatgcctactgcgcctcccagctcaatgttcaccttg
tatggtttgaaggagcgctgtgcagctgctgaaacaatatcattggttgctcgagttttg
aacagatctcgagcacatctacattccgttctgtctcaaagtaacacttccattcttgaa
gaattctttgggacaatggttgactctgttccagatttggctgagcacattcatagaaca
agtgcaaggatgcttttgcatatcaatgggtatccagataagattgcaaatgccaaatgg
gaggtcaaggagcttggcatggagcataatggctatgttgatttgttattgggtgaattc
aagcactacaaaactagattggaccatggaggaatttccaaggagctccaagacctcttg
ctggagtatggcatagatagcatcgcagaagttttagttgaaggtctctctagggtaaaa
cggtgcacagatgaaggacgggctttgatgtcactggaccttcaggtactaattaatggg
ctgctgcacattgtatccgcaaatgttaggccaaagctgcaaattgtggatactttcata
aaggcttattatttgccagagaccgagtatgttcattgggcacggtctcatccagaatac
agcaaaagtcaggttgtcgggttggttaacctggttgcgactatgaaaggatggaaacgg
aaaacgaggttagaaaccatcgagaggattgaggcaggaccatag
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