Oryza sativa japonica (Japanese rice) (RAPDB): Os10g0548200
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Entry
Os10g0548200 CDS
T02163
Name
(GenBank) Tetratricopeptide-like helical domain containing protein
KO
K12600
superkiller protein 3
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os10g0548200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os10g0548200
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
Os10g0548200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_11
TPR_14
TPR_17
TPR_8
TPR_CcmH_CycH
TPR_7
TPR_19
TPR_9
ARM_TT21_C
TPR_21
NatA_aux_su
BTAD
Motif
Other DBs
NCBI-ProteinID:
BAF27139
RAP-DB:
Os10g0548200
UniProt:
B9G6V6
LinkDB
All DBs
Position
10
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AA seq
1196 aa
AA seq
DB search
MPEKAAEANLRKQLEQTLAGEPSSPLHHYNLGVFLWDRAEAAAREEGEEEEEVRRLRAAA
AERFLAAAKLDPNDGVPFRFLGHHYALAGDAQRAAKCYQRAATLNPDDAEAGEAVCDLLD
LEGKESLEIALCKEAAGKSPRAFWAFRRLGYLQVHQKKWSEAIQSLQYAIRGYPTCADLW
EALGLAYHRLGMFTAAVKSYGRAVELDGSKVFALIESGNIQLMLGYFRKGVEQFRSALEM
APQNHSAYFGLASALLAWARQCVMTGAFGWAASLLKEACKAAKVCTSLTGNLSCVWKLHG
DAQLALARCFPWGDGNIKGGMDDGTFRTTVLEWRNTCLLAANGAKFSYQRALHLTPWEAN
IHNDTAICLDLIYTIEENNSLDPITWELPEKMSLGGLILEPVNKDFWVTLGSVSSNQALK
QHSFIRALHLDMSLSEAWAYLGKIYRHSGDKQLARQAFDRARSIDPSLALPWAGMSAENY
HQPGDGPVNECFESCLRAVQILPLPEFQIGLGTIAARSGELLSPQVLMAVRQAVQRAPHY
PESHNINGLVSEVRSDFQSAIASYRQAKFALDMMRNSKTDCRCHIADISVNLARSLCKTG
LATEAVRECEELKRQGFLNDDGLQIYALSLWKLGRHDEALSVSRNLAENLSSMKQESATA
ALGFICTLTYNISGKDSAAAVIHKLPGQLNYSTQLKFIISALDALQPNKRFQLPQLSMPP
RLTSYEVMSEVHSNIALGNAIGGESDKFLRVDGGLSYLKKVLHMYPDCSLVRNQLGSLLL
SSEDWMASHKAVRVTSLSRGYTSNRGLRSPHQIQACAAVSCYATCTSYPKFSFPTCEDQY
LSGYNAICRLQRWVHLEPWNQDARRLLVLTLFQKAREEKYPKHICTILKRLILQVLSSGS
NSQDNKVVQYGNYLLLLVASEVSLQSGDHGNCIAQATEALGVTSSSVDSFFAHLQLCRAY
VMQGNLLNSRSEYMKCLQNRTDTEIGWVILKQLASICSLEGTPDEIEIHLGGCVERKGSN
ASKWMSLFYLACAQCSVWNEDFASAEKAIAQACAEGDPDSCVLFLNGAICMDIAWRFAAP
QFIARAASSLRKAQQKSLASLPIVSLLLAQAEGSLGSKAKWEKNLRLEWFSWPPELRPAE
LYFQMHLLATQSSAATSQQNQLVETMQTPEKWLLRAIHLNPSCSRYWTALMQLVYV
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaaggcggcggaggccaacctccgcaagcagctggagcaaaccctcgccggc
gagccatccagcccgctccaccactacaacctcggcgtcttcctatgggaccgcgcggag
gcggcggcgagggaggagggcgaggaggaggaggaggtgaggcggctccgtgcggcggcg
gccgagcgcttcctcgcggcggccaagctggaccccaacgacggcgtccccttccgcttc
ctcggccaccattatgcgcttgccggcgacgcgcagcgagcggccaagtgctatcagcgg
gcggcgacgctcaaccctgatgatgccgaggctggggaggcggtctgtgatttgctagat
ttggagggcaaggaaagcttggagatcgctttgtgcaaggaggcagctggcaagtcaccc
cgggcattttgggcgttccggaggttggggtacttacaggttcatcagaagaaatggtca
gaggctatacagagccttcagtatgcaatacgaggttacccaacatgtgcagatttatgg
gaagcactcggtctggcataccaccgtttgggcatgtttactgcagcagtaaagtcgtat
gggcgagctgttgaactggatggttccaaggtctttgcgttgatagaaagtggaaacatc
cagctaatgcttggttattttagaaagggtgttgaacagttccgctctgccttggagatg
gctcctcaaaatcattccgcgtactttggtcttgcttctgcattgcttgcttgggcaagg
cagtgtgtaatgactggggcctttggctgggcagctagtctgttgaaggaagcatgcaaa
gctgccaaagtttgtacttctttgactggaaacctttcctgtgtttggaaactgcatgga
gatgctcagctcgcacttgcaagatgctttccatggggtgatggtaatatcaaggggggt
atggatgatggtactttcaggactactgtacttgagtggagaaatacatgtttgttggct
gcaaatggtgcaaaattctcataccaacgagctttgcatctcactccctgggaagctaat
attcacaatgacactgctatatgtcttgatctcatttataccattgaggagaataatagt
ctagatcccataacttgggaactgccagagaaaatgtcgttgggtgggttgatactggaa
ccagtcaataaggatttttgggttacattgggctcggtgtcaagtaatcaagctttaaaa
cagcattcttttatcagagcactgcatcttgatatgtctctctctgaagcttgggcatac
cttggaaagatttacaggcattcaggtgataagcagttggcaagacaagcatttgatcga
gctcgaagcattgatccttcactggccttgccatgggcaggaatgtcagctgaaaattac
caccagcctggggatgggccagtaaatgaatgttttgaaagctgcttgcgggctgtgcag
atacttcctcttccagagttccagattggtcttggaacaattgctgctcgttctggtgaa
cttctatcacctcaggtattgatggctgtaaggcaagctgttcaacgggcacctcattac
cctgagtcgcacaacataaatggcttggtttctgaagtgcgatcagacttccaatctgca
attgcatcgtaccgacaagcaaaatttgctttagatatgatgcgcaactccaaaacagac
tgcagatgtcatattgctgatatttccgtgaatcttgcccggtcactatgtaagactggt
cttgcaactgaggcagtgcgggagtgcgaagaattgaaaagacaaggatttctgaatgat
gacggattgcagatatatgctctttcattatggaaacttggtcggcatgatgaagctctt
tcagtatcaagaaacttggctgaaaacttatcgagtatgaagcaggagagtgcaactgca
gctttaggattcatatgcacgttgacatacaacatctctgggaaggactctgcagctgcg
gtcattcataaactgcctggtcaactcaattacagcacacagctgaaatttattatctct
gcattagatgctttacagccaaacaagcgttttcagttaccccagctgagtatgcctcct
aggcttacatcgtatgaagtcatgagtgaagtccactcaaatattgctcttggaaatgct
attggtggggaatcagacaagtttttaagggttgatggtggcctgtcttacctgaaaaag
gttctacacatgtatcccgactgcagtttagtaagaaaccaacttggatctctgctactg
tcaagtgaagattggatggcttctcataaagcagtaagggttacttcattgtcccgggga
tatacatccaataggggcttaagatctccacaccaaattcaagcatgtgcagcagtttct
tgctatgctacctgcacttcttacccaaagttctcttttccaacatgtgaagatcaatac
ctaagcggatacaatgcaatatgccgcctgcaaaggtgggttcatctagaaccgtggaac
caagatgcacgtcgcctccttgtacttacccttttccaaaaagcacgtgaagaaaagtat
ccgaaacatatctgcaccattttgaagaggctgattttgcaagttctctccagtggtagc
aattcacaagacaataaggtggttcagtatgggaactacttgttacttcttgtggcttca
gaggttagtttgcaatctggtgaccatggcaactgtattgctcaagctactgaagctctt
ggagtaacttcttcgagcgtggattctttctttgcacacttgcaactgtgtcgggcctat
gtgatgcaaggcaatcttttgaactctaggagtgagtacatgaaatgcctgcaaaaccgt
acagatactgaaattggctgggtaatacttaagcaacttgcatctatatgttcactggag
ggtacccctgatgaaatagagatacatctcggaggatgcgttgaaaggaaaggtagcaat
gcatccaaatggatgtctcttttttatctagcatgcgctcagtgttcagtatggaatgag
gactttgcaagtgctgaaaaagctattgctcaggcatgtgctgaaggggatcctgacagc
tgtgtcttatttctcaacggcgcaatttgtatggacattgcttggaggttcgcggcccct
caatttatagcccgtgcagcttccagcctcagaaaggcacagcagaaatcacttgcttct
ttacctattgtgtccctcttactggcccaagcagaaggcagccttggctccaaagccaag
tgggagaaaaaccttcgtctagagtggttctcatggcccccagaattgaggcctgctgag
ctctatttccagatgcatcttctggcaacgcagtcaagtgcagcaacttcccagcagaac
cagctagtggaaaccatgcaaaccccagagaagtggcttctcagggcgatacacctgaac
ccgtcgtgctctaggtactggacggctctgatgcaactcgtgtacgtgtaa
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