Oryza sativa japonica (Japanese rice) (RAPDB): Os11g0176200
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Entry
Os11g0176200 CDS
T02163
Name
(GenBank) Similar to HUA enhancer 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os11g0176200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os11g0176200
03041 Spliceosome [BR:
dosa03041
]
Os11g0176200
03009 Ribosome biogenesis [BR:
dosa03009
]
Os11g0176200
03016 Transfer RNA biogenesis [BR:
dosa03016
]
Os11g0176200
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Os11g0176200
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
Os11g0176200
Spliceosome [BR:
dosa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
Os11g0176200
Complex C
U4/U6.U5 tri-SnRNP related factors
Os11g0176200
Ribosome biogenesis [BR:
dosa03009
]
Eukaryotic type
Pre-60S particles
Helicases
Os11g0176200
Transfer RNA biogenesis [BR:
dosa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
Os11g0176200
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
BAF27729
RAP-DB:
Os11g0176200
UniProt:
B9G9P0
LinkDB
All DBs
Position
11
Genome browser
AA seq
1003 aa
AA seq
DB search
MEEVENTSKRKAPESEHAAAVSGEHPPPPPPPDAAAKRRNLSRSCIHEVAVPKGYAAAKD
EAVHGTLSSPAFHGEMAKAYPFQLDPFQSVSIACLERNESVLVSAHTSAGKTAIAEYAIA
MSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRAML
YRGSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWI
CNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDEDGQFREDNFLKLQDTFTKQSNQ
VDGRKGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSMS
KLDFNTDEEKDNIEQVFSSAILCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPLIKELV
ELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIASGEYIQMSGRAGRR
GKDIRGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILNLMSRVEGQFTAEHVI
RNSFHQFQYEKALPEVVQKITSLENEATLLDSSGETDLAEYHKLGLDISELEKKIMSEMI
RPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPQSGTLPPALSASRGNNYIVDTLL
HCSSSSNENGSRSKPLPPRPGEKGEMHVVPVPLPLLSGLSSVRINIPPDLRPPEARQNIL
FAVQELGKRYPQGLPKLDPIKDMGLQEPELVELVHKLDDLEQKLCSHPLHKSDQSEQQLS
WYQRKAELNHEIQMLKSKMRDSQLQKFRDELRNRSRVLKMLGHIDADGVLQLKGRAACLI
DTGDELLITELMFNGTFNDLDHHQVASLASCFIPCEKSSEQIRLRSELSTPMMQLQEAAR
KIAEVQKECKLEVNVEEYVESTCRPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRLARR
LDEFLNQLKAAAQAVGEVNLENKFGAASDSLRRGIMFANSLYL
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtggagaacacgagcaagcggaaggcgccggagagcgagcacgccgccgcc
gtctcgggggagcatccgccgcctccgccgccgcctgacgcggcggcgaagcggcggaac
ctgtcgcggtcgtgcatccacgaggtggcggtgcccaagggctacgccgcggccaaggac
gaggcggtgcacgggacgctctcgagcccggccttccatggcgagatggccaaggcctac
ccgttccagctcgaccccttccagagcgtctccatcgcctgcctcgagcgcaacgagtcg
gtgctcgtctccgcccacacctcggcggggaagaccgccattgccgagtacgccatcgcc
atgtcgttccgggacaagcagagggtcatatacacctcccctctcaaggccctgagcaac
cagaagtacagggagctcagccaggagttctccgatgtcggattgatgaccggcgatgtc
acgctgcagccgaacgcgacttgcctcgtcatgaccacggagatcctcagggcaatgctc
tacagggggtccgaggtgatcaaggaggttgcctgggttatctttgatgagatccactac
atgaaggatcgcgagcgcggggtcgtgtgggaggagagtataatcttcctgccacctgcc
atcaagatggtgttcctctctgccaccatgtcgaacgcgaccgagtttgccgagtggata
tgcaatctgcacaagcaaccttgtcatgtggtgtatactgacttcaggccgacaccgtta
cagcactatgtgttcccgattggcggctccggtctctaccttgtagtagatgaggatggc
caattcagagaggataattttttgaagctgcaagacacgttcacaaagcaaagtaatcaa
gtggatggaaggaagggtggtggacctaaagccagtggtcgaatagcaaagggcggaagt
gcctctggaaattcggacatatacagaatcgtcaagatgattatggaacggaagtttcaa
ccggtcataattttcagctttagcagaagagaatgtgaacaccatgccatgtcaatgtca
aaacttgacttcaacactgatgaagaaaaagataacatcgaacaggttttcagcagtgct
attctatgtttaagtgaggaagatagaggtttgcctgctatagagttgatgttgcctctt
cttaaacgaggtattgcagttcaccattctggattgcttccattaattaaagagctggtg
gagttgctcttccaagaaggccttgtaaaagctctctttgctactgaaacatttgccatg
ggactgaatatgcctgcaaaaaccgttgtgttcacgtctgtcaaaaaatgggatggtgat
actaaccgctatattgcttctggagaatatatacagatgagtggaagagctggtcggcgt
ggcaaggatatacgtggaatttgtgttataatgatagatgaaaaaatggagatgagtgtt
ataaaggacatggtgttaggtaaaccagcacctcttgtcagtactttccggctgagctat
tacacaattctcaatttaatgagtcgcgtggagggccagtttactgctgagcatgtgatc
aggaattcattccatcagtttcaatatgagaaggcattgccagaagtggtgcaaaagatt
acatcattggaaaatgaagctaccttacttgattcttctggagagactgatcttgcagaa
tatcataaattggggcttgatatatcggaacttgaaaagaaaatcatgtcggagatgatt
agaccagagagggctttgttatacttggttcctggaaggctggttaaagtgagagatggt
tcaacagactggggatggggtgtggttgtaaatgtggttaagaaacctccacaatctggt
actctccctcctgcactaagtgcatctcgtggtaataactatatagtggataccctgctt
cactgttcttctagttcgaacgagaatggatcccgttcaaagccattgccaccacgccca
ggggagaagggagaaatgcatgtggtgcctgtaccactacctttattatctggtctaagc
agtgttagaatcaacattcctcctgatctacgaccacctgaagcaagacaaaatatactt
tttgcagtgcaagagctgggaaagcggtacccccaaggtcttccaaagctagatccaatc
aaagacatgggtcttcaagaacctgaactagtggagttggttcataagcttgatgatctt
gagcagaaactgtgttctcatccacttcataagtctgatcaaagtgagcagcaactgtca
tggtatcaaagaaaagctgagctaaatcatgaaattcaaatgctaaagtcaaagatgcgg
gattcgcagctacaaaaatttagagatgagcttaggaatcggtcccgtgttctgaagatg
cttggtcacattgatgctgatggtgtgctccagctgaaaggacgtgctgcctgtttaata
gacacaggggatgagctgcttatcactgaacttatgtttaatggtacatttaacgatctt
gatcatcatcaagttgcttcccttgctagctgctttataccttgtgagaagtctagtgaa
caaatacgcctgagaagtgagctttctacaccaatgatgcagctacaggaggctgcgaga
aaaatagctgaggtacaaaaagaatgcaaattagaggtaaatgttgaagaatatgtcgaa
tcaacttgtaggccctacctgatggatgtcatatactgttggtcaaagggggccactttt
ggagaggtgatagaaatgactgacatttttgaaggaagtatcatacggctggctagaaga
ctggatgaatttctgaatcagttgaaagctgctgctcaagctgttggtgaggttaacctt
gagaacaagttcggagcggccagcgacagcttacgtcggggtatcatgttcgccaactca
ttgtatctgtga
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