Oryza sativa japonica (Japanese rice) (RAPDB): Os11g0249400
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Entry
Os11g0249400 CDS
T02163
Name
(GenBank) Virulence factor, pectin lyase fold family protein
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa00040
Pentose and glucuronate interconversions
dosa01100
Metabolic pathways
Module
dosa_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Os11g0249400
Enzymes [BR:
dosa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
Os11g0249400
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
Tox-WTIP
Motif
Other DBs
NCBI-ProteinID:
BAF27983
RAP-DB:
Os11g0249400
UniProt:
Q0ITJ1
A0A0P0Y0Q2
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Position
11
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AA seq
419 aa
AA seq
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MPRRAHAHAAVAAHLLVSAFVAAAAAAAATYNVIDYGAVGDDGGVTDSARAFEAAWAAAC
AGDAAAAAATVVVPAGGVYLVSRARFAGPCRSGAVAVNMTGATVVAPVPYAGVQLWIVFQ
DVDGVSVAGGTLDGRGRALWACRRARRPDCPPATRSLTIYRSRNVAVRGLTSRDSAGIHI
TVQASAGVAIVDTVVSAPGRSPNTDGIHIKQSTGVTVRNAVIGTGDDCVSMVEGSSDVLI
EAVTCGPGHGISIGSLGDTPEQVAVRNITVKGAALAGTTNGLRIKTWAKANAGAVAGVSF
SGVVMRNVSNPIIVDQNYCPGNASCPTEARSPETCDLGSGIEISGVSYTDIEGTSATATA
VRFDCSPSRPCAGIAMRDVRLRYQPPAAAAEEEQPAASFCRNAHGVAFGDVDPPSCLTE
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgccgcgctcatgctcatgccgccgtcgccgcgcacttgctggtgtcggcgttc
gttgcggcggcggcggcggcggcggcgacgtacaatgtcatcgactatggcgcggtgggc
gacgacggcggggtgacggacagcgcgcgggcgttcgaggccgcgtgggcggcggcgtgc
gcgggcgacgcggcggcggcggcggcgacggtggtcgtgccggcgggcggggtgtacctg
gtgtccagggcgaggttcgccgggccgtgccggagcggcgcggtggccgtgaacatgacg
ggcgccacggtggtcgcgcccgtgccgtacgccggcgtgcagctgtggatcgtgttccag
gacgtggacggcgtgtccgtcgccggcgggacgctggacggccgcggccgcgcgctctgg
gcgtgccggcgcgcacgccgccccgactgcccgcccgccacgaggtcgctgacgatatac
cggtcgaggaacgtggcggtgcgcgggctgacgtcgcgggacagcgccgggatccacatc
accgtgcaggcgagcgccggcgtggcgatcgtggacacggtggtgtcggcgccggggcgc
agccccaacaccgacggcatccacatcaagcagtccaccggcgtgaccgtccgcaacgcc
gtcatcggcaccggcgacgactgcgtctccatggtcgagggctcctccgacgtcctgatc
gaggccgtcacttgcggccccggccacggcatcagcatcgggagcctgggggacacgccg
gagcaggtggcggtgcggaacatcaccgtgaagggcgcggcgctcgccgggacgacgaac
gggctgcggatcaagacgtgggcgaaggcgaacgccggcgcggtcgccggcgtctccttc
tccggcgtcgtcatgcggaacgtcagcaacccgatcatcgtcgaccagaactactgcccc
ggcaacgccagctgcccaaccgaggcacgcagccctgaaacctgtgacctcgggtcgggg
atcgagatcagcggcgtgtcgtacacggacatcgaggggacgtcggcgacggcgacggcg
gtgaggttcgactgcagcccgagccggccgtgcgccgggatcgccatgagggacgtccgg
ctgaggtaccagccaccggcggcggcggcggaggaggagcagccggcggcgtcgttctgc
cggaacgcgcacggggtggcgtttggggacgtcgatccaccgagctgtctaaccgagtag
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