Oryza sativa japonica (Japanese rice) (RAPDB): Os11g0572100
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Entry
Os11g0572100 CDS
T02163
Name
(GenBank) Similar to DNA ligase (EC 6.5.1.2)
KO
K10754
replication factor C subunit 1
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03030
DNA replication
dosa03410
Base excision repair
dosa03420
Nucleotide excision repair
dosa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Os11g0572100
03410 Base excision repair
Os11g0572100
03420 Nucleotide excision repair
Os11g0572100
03430 Mismatch repair
Os11g0572100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dosa03032
]
Os11g0572100
03400 DNA repair and recombination proteins [BR:
dosa03400
]
Os11g0572100
DNA replication proteins [BR:
dosa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
Os11g0572100
DNA repair and recombination proteins [BR:
dosa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
Os11g0572100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA_lid_RFC1
AAA
Rad17
AAA_22
AAA_30
RCF1-5-like_lid
AAA_19
PTCB-BRCT
RuvB_N
AAA_5
nSTAND3
AAA_16
AAA_17
AAA_assoc_2
BRCT_2
AAA_18
AAA_24
Gp44_lid
Zeta_toxin
AAA_14
RNA_helicase
RsgA_GTPase
Sigma54_activ_2
NTPase_1
ABC_tran
Mg_chelatase
AAA_2
TsaE
NPHP3_N
AAA_33
Motif
Other DBs
NCBI-ProteinID:
BAF28486
RAP-DB:
Os11g0572100
UniProt:
Q2R2B4
LinkDB
All DBs
Position
11
Genome browser
AA seq
1021 aa
AA seq
DB search
MSSDIRKWFMKAQDKNGGAAKPAGTTALAKKPVLSIPEKPSAAPSMAACDQDCSARRKTS
KYFASKTEKEEDTSAGKGTGRGLPKRKLQKVSDELEDDMKPLPAKEVHKEEEDDDDDDFV
APSKRKTPVKPPPSKKLKGASTAEAHGKTGLDDDNEDKMDEDAKTPSKASGSGRGRGRGR
GRGGRGAGAAHGKTIGLDDDGEEDKMDEDAKTPSKAAGRGRGGASGGRGRGGGGRGFMNF
GERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKT
NYLLADEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSDKNSEKQQKSP
MKSSPVKVERRDGNQITTGKNISPKSNKGSASIDNQKVNIVDRGSLQWTEKYRPKVPNDI
VGNQSMVKQLHDWLRSWEDQFLHSGQKGKGKKQADSGAKKAVLLSGPPGIGKTTTAKVVS
QMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNATLNYSNNRLKRPKAVLVM
DEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQM
GKRLMEIAKKEGLQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIRQRLNSS
TKDEDISPFTAVDKLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPITVGKDDS
GVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGE
RNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLK
TMPKDEAVQKVVEFMDTYSLSQEDFDTIVELSKFKGHPNPMDGIQPAVKSALTKAYKQGS
SSRVVRAADLVNIPGMKKPLKKRVAAILEPVGESLPEENGVASSEGDEEDSSDAENNDEL
VPGDTKPKLDLQSDKKKGIQVQLDLKSNGNGLNSKKMPAGRSKASGSAGKAAGGSGGKRK
R
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcggacatcaggaaatggttcatgaaggcgcaggacaagaatggtggcgcagcg
aagccggctgggacgacggcgttggcgaagaagcccgtgctcagcattccggagaagccg
tcggcggcgccatctatggcggcttgtgatcaagattgttcagctagaaggaagactagc
aagtactttgcatccaaaacagaaaaggaggaagacaccagtgcaggaaaaggtaccggg
agaggtttgcctaaaagaaaacttcagaaagtcagtgatgagcttgaggatgacatgaag
cctttgccagcaaaggaagtccataaagaagaagaagatgatgatgacgacgactttgtg
gcaccttcaaaaaggaaaactccggtgaagccaccaccatcaaagaagttgaagggtgca
tctactgctgaagctcatggaaagactggtcttgatgatgataacgaggacaagatggat
gaagacgctaagaccccttccaaggcatctggaagtggaaggggaaggggaagggggaga
gggaggggaggaagaggagcaggagcagcccatggaaagacaattggtcttgatgacgac
ggtgaggaggataagatggatgaagatgccaagaccccttccaaagcagctggaagggga
aggggaggagcctctgggggaagagggagaggagggggtgggagaggcttcatgaacttt
ggtgaaaggaaggatcctcctcacaaaggggagaaggaagtcccggagggtgcccctgac
tgtttaactggtttgacatttgtcataagtggcactcttgacagtcttgaacgtgaggag
gcaactgatctaatcaagcgttatggaggccgtgtgaccggctctattagcaaaaagacg
aattacctattggctgatgaagacgttggtggagtgaaatcaaataaagcgaaagaactg
ggcgtcccattcctaactgaagatggtttatttgatatgattcggaaatcaaagcctgca
aaggctactgtggcaaaacatcaaagcgacaaaaattcagaaaagcagcaaaaatcacca
atgaagagttctccagttaaagttgaaagaagagatggtaatcaaattaccacaggcaaa
aatatttcaccaaagagtaataaaggaagtgcctccattgacaaccaaaaggtcaacatt
gttgaccgtggttctttgcaatggactgaaaagtatcggcccaaagttccaaatgacata
gttgggaaccaatcaatggttaaacagcttcatgattggttgagaagttgggaggaccaa
ttccttcattctggccagaagggtaagggaaagaagcaggctgatagtggagctaaaaag
gctgtgttgttgagtggacctccaggtattggtaagaccacaactgctaaagttgtcagt
cagatgcttggattgcaggctattgaggttaatgcaagtgatagccgtggtaaggcagac
tctaagattgagaaaggtgttgggggcagtacatcaaattctatcaaagagcttattagt
aatgcaactctgaattatagtaacaaccgattaaaacgacccaaggctgtactagtcatg
gatgaagttgatggtatgtctgctggagatcgtggtggtgttgctgatcttattgctagc
attaagatgtccaagattcctataatttgcatttgcaatgaccgttatagccagaaattg
aagagccttgtaaattactgcttgctactcaacttcagaaaaccaaccaagcaacagatg
ggtaagaggttgatggaaattgccaagaaggaaggtcttcaagctcaagagaatgcaatg
gaagaacttgcagaaagagtacacggggatattcgcatggctcttaaccatttgcaatat
atgagcctctcccagtccgtggtcaaatatgatgatataagacagcgacttaatagtagc
acaaaagatgaagatatttcccccttcacggctgttgacaagctgtttggttttaatggt
gggagactacggatggatgagagaattgatttgagcatgagcgatcctgatttagtccct
ctgattatccaggaaaactatatcaattatcggcctatcactgttgggaaggatgacagt
ggagttaaaagaatgaattttcttgctcgtgctgctgaatctatagcggacgctgatatt
gttaatgtacaaataagaagatatcgacagtggcaattgtcccaagctgcttgtttgtct
tcatctatagttcctgctgctttgatgcatgggaatagagagatccttgaagcaggtgag
cgaaacttcaataggtttggtggatggttgggaaagtactcgaccacaaataaaaacata
aggctactggaagatgcccatagtcatattcttgcctcccagcaagcaaatttggacagg
gagtcattgaggctggattacctcactcttctcttgagacaattgactgatccactgaag
acaatgcccaaggatgaagctgtgcaaaaagtggtggagtttatggatacctactcttta
agccaggaagactttgacacaattgttgaattatcaaaatttaagggtcatccaaatcct
atggatggtattcaaccagctgttaaaagtgccttaacaaaagcatacaaacaaggaagt
agttctcgtgttgttcgagcagcagatctagtaaatatcccaggcatgaaaaagccatta
aagaaacgagtggcagcaatccttgagccagtgggagagagtttgcctgaagaaaatgga
gtagcgtcatctgaaggcgatgaagaggattcctctgatgctgaaaataatgatgaactg
gtgcctggtgacacaaaaccaaaactggacctgcagagtgataagaagaaagggatccaa
gtgcagctcgacctgaagagcaatggcaatggcttgaactcgaagaagatgccggctggt
agatcaaaagcttctggctctgctgggaaggctgctggaggctcaggtgggaagaggaag
aggtaa
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