Oryza sativa japonica (Japanese rice) (RAPDB): Os12g0100100
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Entry
Os12g0100100 CDS
T02163
Name
(GenBank) Similar to ALY protein
KO
K12881
THO complex subunit 4
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03013
Nucleocytoplasmic transport
dosa03015
mRNA surveillance pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os12g0100100
09122 Translation
03013 Nucleocytoplasmic transport
Os12g0100100
03015 mRNA surveillance pathway
Os12g0100100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os12g0100100
03041 Spliceosome [BR:
dosa03041
]
Os12g0100100
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Os12g0100100
TREX complex
Os12g0100100
Spliceosome [BR:
dosa03041
]
Complex C
Other components
EJC/TREX
Os12g0100100
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Os12g0100100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Kdo_hydroxy
Motif
Other DBs
NCBI-ProteinID:
BAF28929
RAP-DB:
Os12g0100100
UniProt:
Q2QZ01
Q0IQT6
LinkDB
All DBs
Position
12
Genome browser
AA seq
228 aa
AA seq
DB search
MAADSLLDMSLDDLITNKYKRRSRPGPAPSARRSHSRAATRSAAAPYHAITFQAPPTAYV
HPTPAANVETGTKLYISNLDYAVSNEDIKELFSEVGDVKRYSINYDRSGRSKGTAEVVFS
RKSDALAAVKRYNNVQLDGKPMKLELIGINIEPPPPAIFGFAAPAGYFDFPPKRGGRGWP
RGRGGFGGRGRGHVGRGRGRGDRGSRKISAEDLDADLDKYHAEGMQMS
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggactcgctgctggacatgtccctcgacgacctcatcaccaacaagtacaag
cgccgctcccgtccaggtccagcgccctctgcccgccgctcccactcccgcgccgccacc
cgctccgctgccgctccctatcacgccatcacctttcaggcgccgcccacggcctacgtc
cacccgacgcccgcggccaacgtcgagaccggcaccaagctctacatctccaacctcgac
tacgccgtctccaacgaggacatcaaggaactcttctctgaggttggcgatgtcaagcgt
tactctattaactatgacaggagtggaagatccaagggaactgcagaggttgtattttcc
agaaaatctgacgccctggctgctgttaagaggtacaacaatgtgcagctggatggcaaa
cctatgaaacttgagctcattggtataaatattgagccaccaccacctgctatttttggt
ttcgctgcaccagctggatacttcgattttcctcccaaaaggggtggaagaggatggcct
cggggcaggggtggatttggtgggcgtggtcggggtcatgtgggtcgtgggcgagggagg
ggagaccgtggaagtcggaagatttctgctgaagacctggatgctgacttggacaagtac
catgcggaaggaatgcaaatgagctag
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integrated database retrieval system
