KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os12g0139500
Entry
Os12g0139500      CDS       T02163                                 
Name
(GenBank) RNA polymerase Rpb5, N-terminal domain containing protein
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03020  RNA polymerase
dosa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Os12g0139500
  09124 Replication and repair
   03420 Nucleotide excision repair
    Os12g0139500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dosa03021]
    Os12g0139500
   03400 DNA repair and recombination proteins [BR:dosa03400]
    Os12g0139500
Transcription machinery [BR:dosa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     Os12g0139500
  RNA polymerase III system
   RNA polymerase III
     Os12g0139500
  RNA polymerase I system
   RNA polymerase I
     Os12g0139500
DNA repair and recombination proteins [BR:dosa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      Os12g0139500
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N DUF2605 DnaT
Other DBs
NCBI-ProteinID: BAF29138
RAP-DB: Os12g0139500
UniProt: A0A0P0Y782 A3CET7
LinkDB
Position
12
AA seq 227 aa
MAAEMEVDDVDVHEVPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTL
PEFRAWWAEKPGIERLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRL
VLILQSKILSRAREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEY
NVEDSQLPRMLETDAVARYYGFDKGTVVKVTYDGELTGKRVAYRCVF
NT seq 684 nt   +upstreamnt  +downstreamnt
atggcggcggagatggaagtcgacgacgtcgacgtgcatgaggtccccgaatgcatagcg
tcgatgatcgaccgcggcagcgtggagagccaccgcctgttcctggcgcgccgcacggca
atggagatgctccgcgaccgcgggtacagcgtgccggaggccgagatcgcccgcaccctc
cctgagttccgcgcatggtgggctgagaagcctgggatcgaacgcctcgccttcaccacc
accctcgtctccgacccctccaagaaggtacaacttgtattctgtccaccagagcctgtc
aaaatcgcaactatccgagagatatatctccaaacaaaagaagagaacttgtccaggctt
gttctgatactgcagagcaaaatattatctagagctagagaggctatcaaggagatcttt
aaatttaaagtggacatattccaggccacagatttactggtaaacattactaagcatgtc
ctgaaacccaagcatgaagtgttgagtgcagatcaaaaggccaagctcctcaaggaatac
aatgtggaagactcacagttgccacgcatgctagagactgatgctgttgctcgctactat
ggctttgacaagggaaccgtggttaaagttacatatgacggcgaacttactgggaagcgt
gtggcataccgatgcgtcttctga

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