Oryza sativa japonica (Japanese rice) (RAPDB): Os12g0176600
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Entry
Os12g0176600 CDS
T02163
Name
(GenBank) SWIRM domain containing protein
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
Os12g0176600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dosa03021
]
Os12g0176600
03036 Chromosome and associated proteins [BR:
dosa03036
]
Os12g0176600
Transcription machinery [BR:
dosa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
Os12g0176600
Chromosome and associated proteins [BR:
dosa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
Os12g0176600
PBAF complex
Os12g0176600
GBAF(ncBAF) complex
Os12g0176600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
DUF4428
ZZ
Motif
Other DBs
NCBI-ProteinID:
BAH95542
RAP-DB:
Os12g0176600
UniProt:
C7JA53
LinkDB
All DBs
Position
12
Genome browser
AA seq
740 aa
AA seq
DB search
MPPRKATSSADARAKWRKRKRNANTSAADHSDDSDSAVAAAANDDNDDDDAALHAATAAA
NGGGGTLGGGDDDPVVDLREAEVHPTAIERVSAFPPAFRRVVNRLHPSVLAVMAAERAAA
AAGAGAGGGGAAVPALENISHGQLQVLSSVLPDHPSLSNDPDKPSSYVCTPPLLMECRGV
AKQFDGKLLMVPKHSDWFLPMTVHRLERQVLPQFFSGKSPGHTPEKYIMLRNRVITTYLE
RPARRLAFSECQGLVTSTPELYDLSRIVRFLDAWGIINYLAAGSVQRGLRMAATLIREEP
TGELHLMSAPLKSIDGLILFDRPKCSVRAEDIASGASLSSSPGMENGDAGFDEKTLLERL
SESFCSFCAQPLPSLHYESQKEADIALCSDCFHDARFVTGHSSLDFQRVDGKKDGLDNDG
DSWTDQETFLLLEGIDKYKENWNAVAEHVGTKSKIQCLHHFLRLPVEDGLLENIKVPEAS
FSSKFWLMQNASGSVFKLPQLFALGSLPQSGEAGDLPFINTANPVMSLISIMSLALLFRD
DLQIAFLASSLGPRVAASCASEALIVLTGGDSRISSIGNDVMGHAARPNCGDYLIPKINS
SLAVSSENVRHAARCGLSAAATKCKLFADQEEREIQRLSATIINHQLKRLELKLKQFADI
ETYLLRDSEQSERMRQGLQAQRIRMMSGLRLASPRGNTMASNPLSQANIRPPGIPGSMPQ
AGTPAFYSNNMQVEWGYFRI
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcgcaaggccacctcctccgcagatgctcgggccaagtggcggaagcggaag
cgcaacgcgaacacctccgcggccgaccactccgacgactccgactccgcggtggctgcg
gcggcgaacgacgacaacgacgacgacgacgcggcgctccacgcggccaccgcggccgcc
aacgggggaggcggaaccctaggcgggggcgatgacgaccccgtggtggacctccgcgag
gccgaggtgcaccccacggcgatcgagcgcgtctccgccttcccgcccgcgttccgccgc
gtggtcaaccggctccacccctccgtgctcgccgtcatggcggcggagcgcgccgccgcc
gcggctggtgctggtgctggcggcggcggcgcggccgtccccgcgctcgagaacatctct
cacgggcagctccaggtgctctcgtccgtgctccctgaccacccgtccttgtccaacgac
cccgacaagccgtcctcctacgtctgcacccctcctctactcatggagtgccgcggcgtg
gccaagcagttcgatggcaaattgctcatggtacccaagcattcagattggttcttgcca
atgacggtgcacaggttggagaggcaagtgctgccgcagttcttctcagggaagtccccg
gggcacacgccagagaaatacattatgttgaggaatagggtaattacaacgtatctggag
cgtcctgcgaggaggcttgcattttctgagtgccaagggcttgtcacaagcacgcctgaa
ttgtatgacctgagtagaattgttaggtttttggacgcttgggggattattaattacctt
gcggctgggtctgttcaacggggcttgaggatggcagcaacactaatcagagaggagcca
acaggggagctgcatctcatgtctgctccattgaaatcaattgatggtttaattttgttt
gatcgaccaaaatgcagtgtccgggcagaggatattgcttctggggcatcactttcatct
tctccagggatggaaaatggtgatgctggttttgatgagaagacattgttggagagattg
tctgagagcttttgtagtttctgcgcacaacctttgcctagcttgcactacgagtcacaa
aaggaggcagacattgctctttgctcggattgcttccacgatgcaagatttgttactggg
cactcaagcttagattttcagagagtggatgggaagaaagatggactggacaatgatggg
gacagctggactgatcaggaaacatttctgttattggagggcatagacaaatacaaagaa
aactggaatgctgttgcggagcatgttggaacaaagtcgaaaatacaatgtcttcaccat
tttcttcgtcttccagtagaagatggattgttagagaatattaaagtaccagaagcatcc
ttttcatcgaaattttggttgatgcaaaatgcttctggctccgtttttaaattgccacaa
ttgtttgccttaggaagcttgcctcaaagcggcgaagctggagaccttcctttcattaac
actgctaatcctgtcatgtcactgatctctattatgtctctggccttactgttcagagat
gatttgcagattgcatttttggcctcttcattaggaccaagagttgcggcatcctgtgca
agtgaagcattaattgttttgactggaggtgactccaggatcagttcaattggcaatgat
gttatgggccatgctgctcgaccgaactgtggtgactaccttattcctaaaattaattcc
tcattggctgtctcttcagaaaatgttagacatgctgcaagatgtggcttgtcggcagca
gcaactaagtgtaaactttttgcggatcaggaggagcgtgaaattcagagattaagtgct
accatcataaatcatcagttgaagaggctggagttgaagttgaagcaatttgcagacatc
gagacctaccttttgagggacagtgagcagtccgagaggatgaggcaggggctgcaagct
cagcgcatccggatgatgtcagggcttcggttagcttcacccagaggcaacactatggcc
tcaaatccattgagtcaagcgaacattcgaccgccaggaataccgggatcgatgccccag
gccggcactccagctttctactccaataacatgcaggtagagtgggggtattttagaatt
tag
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