Dolichospermum sp. DET69: EZY12_00055
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Entry
EZY12_00055 CDS
T10135
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dot Dolichospermum sp. DET69
Pathway
dot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EZY12_00055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dot03019
]
EZY12_00055
Messenger RNA biogenesis [BR:
dot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EZY12_00055
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
RNase_J_C
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QSX68160
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Position
complement(11209..12975)
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AA seq
588 aa
AA seq
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MVKNEANSALKIIPLGGLHEIGKNTCVFEYEDEIILLDAGLAFPTEAMHGVNIVLPDTTY
LRENKHKIKGMIVTHGHEDHIGGIAFHLKQFDIPVIHGPRLAMAMLEGKLEEAGVRDRTE
LRTVLPRDMVRIGKHFFAEYIRNTHSIADSFTVAIHTPLGVVIHTGDFKIDHTPVDGEKF
DLQRLAEHGEKGVLCLLSDSTNAELPGFTPSERSVFPNLDREFSHATGRLFVTTFSSSVH
RINMILQLARKHNRVVTIVGRSMLNLIAHARNLGYIKCEDSLFQPLHTVRGMPDERVLIL
TTGSQGERMAAMTRIANKEHPHIKIRKGDTVLFSANPIPGNTIAVVNTIDKLMIQGAKVV
YGRDKGIHVSGHGCQEDQKLMIALTRPKFFVPFHGEHRMLVKHSETAQSMGIPAENMIII
QNGDVIELTETSIRVAGKVASGIELVDTSSSGMVSSKVLEERQRMASEGTVTIAAAIDWS
GKLMAKPELHMQGVVTSIERSLLQKWVQQRIEEILGVRWTEFSPLEGQPADTDWGGLQET
LERELARSMRRELQCQPALTLLMQIPEEPAVKVSDGRRRRTRSTAVAS
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaaacgaagctaattccgctctcaaaattatccctttaggcggcttacacgaa
ataggtaaaaatacttgtgttttcgagtatgaggacgaaattatcctcttagatgcagga
ttagcctttcctacagaagcaatgcacggggtaaatattgtattacctgatacgacttat
ctgcgggaaaataagcacaaaatcaaaggcatgatcgtcactcatggtcacgaagatcat
attggtgggattgcttttcacttgaagcaatttgatattccggtgattcatggaccaaga
ctagcaatggcgatgctagagggtaaattggaagaagcaggagtaagagatcgcacagaa
ttaagaacagttctcccccgtgatatggtgagaattggtaaacatttctttgccgaatat
atccgcaatacccactctattgctgatagtttcactgttgctattcatacaccactaggc
gtagttatccacaccggagattttaaaattgatcatactcccgtggatggtgaaaagttt
gacttgcaacgtttagcagaacatggcgaaaaaggcgtactttgcttattgagtgattcc
actaacgcagaattgccaggatttacaccttccgaacggtctgtttttcccaaccttgac
cgagaattttctcacgctactggacgcttatttgtcacaaccttttcttccagcgtccat
cgcattaacatgattttgcaactagcaagaaaacataatcgtgttgtgacgattgtaggg
cgttccatgttgaatttaatcgcccatgcccgaaatttaggctatatcaagtgtgaagat
agccttttccaaccgttgcatactgttcggggaatgccagatgagagagtgttgatttta
accactggctctcagggtgaaagaatggcagcaatgacaagaattgccaacaaagaacac
ccccatatcaaaattcgcaaaggagatacggttctattctccgctaaccccattcctggt
aacacaattgcagtggttaataccattgataaattgatgattcaaggggcaaaagtggtc
tatggacgagataaagggattcacgtttctggacatggctgtcaggaagatcaaaagctg
atgattgccttaactcgtcctaagttctttgtgccatttcacggtgaacatcggatgtta
gtcaaacattcggaaactgctcaaagtatgggcatcccagcggaaaatatgatcattatc
caaaatggggatgtcatagagttgacagaaacttctatccgcgtggctgggaaagtggca
tctggaattgaattggtggatacttctagttctggcatggttagttctaaggtattagaa
gaacgccaacgcatggcttctgaaggaactgtaactattgctgctgctattgattggagt
ggtaagttaatggctaaaccagaacttcatatgcaaggtgtggtgacaagtatcgagcga
tcgctcttgcaaaaatgggtacaacaacgcattgaagaaattctcggcgttcgttggact
gagttttctcccctcgaaggacagccagcagatacagattggggtggattgcaggaaact
ttagagcgggagttggcgcgttcaatgcggagagagttgcaatgtcaacctgctttgact
ctgttaatgcaaatccctgaagaacctgctgtgaaggtttctgatgggagaagacgacgc
actcgttctactgctgtagcttcttaa
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