Dolichospermum sp. DET69: EZY12_10615
Help
Entry
EZY12_10615 CDS
T10135
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dot Dolichospermum sp. DET69
Pathway
dot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EZY12_10615 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dot03400
]
EZY12_10615 (mfd)
Enzymes [BR:
dot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EZY12_10615 (mfd)
DNA repair and recombination proteins [BR:
dot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EZY12_10615 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QSX69975
LinkDB
All DBs
Position
2299006..2302503
Genome browser
AA seq
1165 aa
AA seq
DB search
MAFSSIVRALARSPLTAELIIKLNKQQELRLNGISRLPKGLVASALANCEDQDLCVICAT
LEEAGRVFAQMEAMGWKTVHFYPTSEASPYEPFDPENELSWGQMQVLADLVNCQSSVVSG
QLQKQKTAIIATVGALQPHLPPQSAFKSFCVTLQKGMEFDLDGFGEKITILGYERVPLVE
TEGQWSRRGDIVDVFPVSSELPVRLEWFGDEIEQIREFDPTTQRSALDKVEKITLTPTSF
APIVLDALKDSADFSNNVEMFHGTSLQESDLASLEGSRRFLGLAFAKPASLLDYLSEHTL
VAIDEPEQCYAHSDRWVENAGSQWSVVNSQLSIELPKIHRTFDECIAEITNFRKLYLSEL
SEENSGLNLASRPLPVTPHQFAKLAETIRQERNRNFAVWILSAQPSRSVSLLQEHDCPAQ
FIPNPRDFQAIDKLQINHIPIALKYSGLAELQGFILPSYRLVIVTDREFYGQHSLANFGY
VRKRRQATSKQVDPNKLREGDYVVHRSHGIGKFVKLESLTINDEIRDYLVVQYADGLLRV
AADQVGSLSRFRTSGDQAPSLHKMTGKAWDNTKNKVRKTIKKLAVDLLKLYAARSKQEGF
SYPADMPWQEEMEDSFPYQPTTDQLKAVQDVKRDMESERPMDRLVCGDVGFGKTEVAIRA
IFKAVIAGKQVALLAPTTILTQQHYHTIKERFAPYPINVGLLNRFRSAEEKRNIQKRLAT
GELDIVVGTHQLLGKTVEFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR
TLYMSLSGIREMSLITTPPPSRRPIQTHLAPLNPEIVRSAIRQELDRGGQVFYVVPRVDG
IEETTTKLREMVPGGRFAIAHGQMDESELESTMLTFGNNDADILVCTTIIESGLDIPRVN
TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGS
GYQLAMRDMEIRGVGNLLGAEQSGQLDVIGFDLYMEMLEEAIREIRGQEIPKVADTQIDL
NLTAFIPSTYITDPDQKMSAYRAVATVKSKYELKQIAAEWTDRYGTIPVSANQLLRVMEL
KQLAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAEKLTSNMKTRFVYSPGKVTARGLGV
FKADQQLQTLIDTFTKMQGAIPETT
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcttctattgtgcgtgctttggcgcgatcgcctcttaccgcagaactaatt
attaaactcaataaacaacaggaattgcggttaaatgggatttctcgtcttcccaaggga
ctggtagcttcagcattagcaaattgtgaagatcaggatttgtgtgtcatctgtgccact
ttagaggaagctgggcgggtttttgcccaaatggaagcaatgggatggaaaactgtgcat
ttttaccccacatccgaagcttctccttatgaaccctttgacccggaaaatgagttgagt
tggggtcaaatgcaggttttagctgatttagttaactgtcagtcgtcagtggtcagtggt
cagttgcaaaaacaaaaaactgccataattgcaactgtgggggcgttgcaaccacattta
ccaccacagtcagcgtttaaatcattctgtgtcactttacaaaaagggatggaatttgat
ttagatggatttggtgaaaaaatcacgattttgggatatgaacgcgttcccctggtggaa
acggaaggacaatggagtagacgcggggatattgtggatgtgtttccggtgtcttcggag
ttgcctgtgcgcttggaatggtttggggacgaaattgaacaaattcgggaatttgatccc
actacacaacgttctgccctggataaggtggaaaaaattactctcaccccaacaagtttt
gcaccgattgttttagatgcactgaaggattctgctgatttctctaacaatgtagagatg
ttccatggaacgtctctacaagaatcggatttagcatcattagaagggagtcggcggttt
ttggggttggcttttgcaaaacctgcttcattactggactatttatcagaacatacgctc
gtagccattgatgaaccagaacaatgttatgctcatagcgatcgctgggtggaaaatgct
ggtagtcagtggtcagttgtcaatagtcagttgtcaattgaattacctaagattcatcgg
acttttgatgagtgtatagcggaaattaccaattttagaaagttatatttatcggaattg
tcggaagaaaatagtggtttaaatttagctagtagacctttaccagttacacctcaccaa
tttgctaagttagcggagacaattagacaagaacgcaatcgcaattttgcagtttggata
ctttcggctcaaccttcccgttcggtttctctcctccaagaacacgattgtcccgcacaa
tttattcctaatcctcgtgattttcaagccattgataaactacaaattaatcatatacct
attgctcttaaatattccggtttagcagaattacaaggatttattttaccttcttaccgt
ttagttattgtcaccgatagagaattttatggacaacattctttagctaattttggctat
gtccgcaaacgtcgtcaagcgacatcgaaacaagttgatcctaacaaattacgggagggt
gattatgttgtgcatcgtagtcatggtattggtaaatttgtcaagttagaaagtttgaca
attaatgatgaaatccgtgattatttagttgtccaatatgcggatggtttgttaagagtt
gctgctgaccaagttggttctttgtctcgatttagaaccagtggagatcaagccccatca
ttacataaaatgaccggaaaagcttgggataatactaaaaataaagtccgcaaaaccatt
aagaaattagcggtagatttgttaaagttgtacgcagcgcgatcaaaacaagaaggtttt
tcctatcccgcagatatgccttggcaagaagaaatggaagattctttcccttatcaacct
accacagatcaactaaaagcggtacaagatgtcaaacgggatatggaaagcgaaagaccc
atggatcggttagtatgtggagatgtgggttttggcaaaactgaagtggcaattagggct
atttttaaagctgtcattgccggaaagcaagtcgcacttttagcaccaacaacgatttta
acacaacaacattatcatacaattaaagaacgttttgccccttatccgatcaatgtgggt
ttactgaatcggtttcgtagtgcagaagaaaagcgcaatattcaaaaacgcctcgctact
ggagaattagatatagttgtaggtacacatcagttattaggtaaaactgtcgagtttaaa
gatttaggacttttggtaattgacgaagaacaaagatttggagttaatcaaaaggaaaaa
atcaaaagtctgaaaactcaagttgatgttttaactctttctgcaactcctattcccaga
accttatatatgtcattatcgggaattagggaaatgagtttaattacgactccaccccca
agcagaagaccaattcaaacccatctcgcacctttaaatcccgaaattgttagaagtgca
attaggcaagaattagatcgaggtggacaggtattttatgtagttccgcgagtagatgga
attgaagaaaccactacaaaattgcgagaaatggttccaggaggaagatttgcgatcgct
catggtcaaatggacgaaagcgagttagaatcaaccatgctaacttttgggaacaatgac
gctgacattcttgtttgtacaacaattattgaatctggtttagatattccgcgagtgaat
acaattttaattgaagatgctcaccgttttggattatctcaattatatcaattacgggga
cgagtaggacgggcaggaatccaagctcacgcatggttattttatcctaaacaaagagaa
ttatctgatgcagccaggcaaagattaagagcaattcaagaatttactcaacttggttct
ggatatcaattagcaatgcgagatatggaaattcgcggtgtaggaaacttgctaggtgca
gaacaatctggtcaactggatgtaattggttttgatttgtatatggaaatgttagaagaa
gcaattcgagaaattagaggtcaagaaatccccaaagttgcagatacgcaaattgacctg
aatctcaccgcatttattccttcaacttacattacagatcctgatcaaaaaatgagtgct
tatcgcgctgtagctacagtcaaatcaaaatatgaattaaaacaaattgctgctgaatgg
actgatagatatggaactatcccagtttctgcaaatcaattattgcgagttatggaatta
aaacaattagccaaaaatctgggatttagccgcattaaaccagagaataaacagcatatt
gttttagaaactcccatggaagaacctgcttggaatttgttagcagaaaaattaacttca
aacatgaaaactcggtttgtttattctcccggaaaagtaacagcaagaggtttaggagta
tttaaagcagatcaacaattgcagactttaatagacactttcacaaaaatgcaaggagca
attcctgaaactacttga
DBGET
integrated database retrieval system
