Dolichospermum sp. UHCC 0315A: BMF77_00492
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Entry
BMF77_00492 CDS
T06185
Symbol
rapA_2
Name
(GenBank) RNA polymerase-associated protein RapA
Organism
dou
Dolichospermum sp. UHCC 0315A
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DUF3670
Helicase_C
ResIII
DEAD
DEAD_2
SWI2_SNF2
ERCC3_RAD25_C
TniB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QEI39935
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Position
complement(523800..526991)
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AA seq
1063 aa
AA seq
DB search
MAILHGTWILNNQNSYFFIWGETWRSSQGQTEVSAEIPLHPLAMTSGELNEWLEASNLSI
AHLIQPSNNTKQRIKSKSATETKLPIHSQIISLPTYFLENKKSELTTISPVHSVSVDIDS
PSSQYLHPWQIDGFCLTPALAIQFLSSLPLSTNDSKSALLGADIHFWVHIYRWHLDLISR
CKFLPTVEKQDSNLIAKWQVLLDSAVDVTRLEKFASQMPLACRTYQQTTENIAIDLPLLP
QEIILSFLNNITDNQLRLMVGSQSPLEPRIMMSLPAALQQWLQGLINENNIIDAAGGEGL
ETTLKAWTLPLQYQLTGKALFRTCFQLLPPENEDPNWTLKYFLQAADNPEFLIDAATIWH
QSVEKLVYQNRTIAQPQETFLRGLGLASRLYPIITPSLETASPEFCHLTPMEAYEFIKAI
TWRFEDSGLGVILPPSLANREGWANRLGLKISAETPQQKSGRLGLQSLLNFQWHLAIGGQ
TISKAAFDKLVKLNSPLVEINGEWVELRPQDIKTAQTFFSSRKEQMSLSLEDALRISKGD
TQVIEKLPVVSFEASGALEELIGILTNNQEIQTLPTPGNFTGQLRPYQERGVAWLAFLER
WGLGACLADDMGLGKSVQFIVFLLHLQEQNALEKPTLLVCPTSVMGNWQKEVKKFAPTIK
VLEYHGDKRPKGKAFTEAVNKHDIVITSYALIHRDIKLLKAIEWQIIVLDEAQNVKNSEA
KQSQAVRQLETTFRIALTGTPVENRLQELWSILDFLNPGYLGNKQFFQRRFAMPIEKYGD
TASLNQLRSLVQPFILRRLKSDKDIIQDLPDKQEMTVFCGLTSEQATLYQQLVDESLVAI
ESAEGLQRRGMILGLLVKLKQICNHPSQYLKLTTLEKHHSAKLQRLEEMLDEVLVEEDRA
LIFTQFAEWGKLLRPYLERKLGREIFFLYGSTSKKQREEMIDRFQHDPQGPPIMILSLKA
GGVGLNLTRANHVFHFDRWWNPAVENQATDRVFRIGQTRNVQVHKFVCTGTLEEKINDMI
ESKKQLAEQVVGAGEDWLTEMDTDQLRNLLILDRNAVIEEDEV
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggcaattttacacggaacttggatactaaataatcaaaatagctatttctttatttgg
ggagaaacttggcgttcttcacagggacagactgaagtatctgctgaaattcctttacat
ccattggctatgacatcaggggaattaaatgaatggttagaagcatctaatttatcaatt
gctcatttaattcaaccatctaataatactaaacaaagaattaaaagtaaatcagcaaca
gaaacaaaattacctattcattcacaaataatttctttaccaacttattttttagaaaat
aagaaatcagaactgacaacaatttctccagttcattctgtcagcgtagatatagattct
ccatcttcacaatatttacatccttggcaaattgatggtttttgtctcactccggcatta
gcaattcaatttctctcatctttacctttgagtacaaatgatagtaaatcagctttatta
ggagcagacattcatttttgggtacatatttatagatggcatttagacttaatttctcgt
tgtaaatttttaccaactgttgaaaaacaagatagtaatttaattgctaaatggcaggta
cttttagatagtgctgtagatgtcactaggttagagaaattcgcctcacaaatgccctta
gcttgtcgaacatatcaacaaactaccgaaaatatagcaattgatttaccattattacct
caagaaattatattatcatttctcaataatattacagataatcaattgcggttaatggtt
ggttctcaatctcctcttgaacctagaatcatgatgtcattacctgcggcattacagcaa
tggttacaaggattaattaatgaaaataatataattgatgcagcaggaggagaaggttta
gaaactacgttaaaagcttggactttacctttacaatatcaacttacaggtaaagcttta
tttagaacttgttttcaattactgcctccagaaaatgaagacccaaattggactttaaaa
tattttctccaagcagcagataacccagaatttttaatagacgcagcgacaatttggcat
caatctgtagaaaaattagtttatcaaaatcgcacaatcgcacaacctcaagaaacattt
ttgcgaggtttgggtttagcttctcgattgtatccgataattacccctagtttagaaacc
gcatctcccgaattttgtcaccttacccccatggaagcttatgaatttatcaaagctata
acttggagatttgaagatagtggtttaggcgtaattttacctcctagtttagcaaatcgg
gaagggtgggcaaatcgtttagggttgaaaattagtgccgaaactcctcaacaaaaatca
ggacgcttgggtttacaaagtttattaaattttcaatggcatttggcaattggtggacaa
acaatctctaaagctgcgtttgataaactggtaaaattaaatagtcctttagtcgaaatt
aatggtgaatgggtggaattgcgtccccaagatattaaaactgcccaaactttttttagt
tcccgtaaagaacaaatgtctctttccttagaagatgctttacgcattagtaaaggagat
actcaagtaattgaaaaattacctgttgtcagttttgaagcttctggtgcattggaagaa
ttaattgggatattaactaataatcaagaaattcaaactttaccaactcctggcaatttt
accggacaattaagaccttatcaagaacgtggtgtagcttggttagcgtttttagaaaga
tggggtttgggcgcttgtttagcggacgatatgggattaggtaagtcggtacagtttata
gttttcctacttcatctccaagaacaaaacgcattagaaaaaccgacgcttttagtatgt
cctacttcagttatgggcaattggcaaaaagaagtcaaaaaatttgcccccacaatcaaa
gttttagaatatcacggtgataaacgccctaaaggtaaagcatttacagaagcagttaat
aaacacgatatagtaattactagctatgcactgattcaccgcgatattaagttattgaaa
gcaattgaatggcaaataattgttttagacgaagcccaaaatgtcaagaattcagaagca
aaacaatcacaagcagttcggcaattagaaaccacatttcggattgctttaacaggaaca
cctgtagaaaatagattacaagaattatggtctattttagattttcttaatcctggatat
ttaggtaataaacaatttttccaaagacggtttgctatgccgattgaaaagtatggtgat
actgcttctttaaatcaattacgttctttagttcaaccttttattctgcgacgattaaaa
agtgataaagacattattcaagacttgccagataagcaagaaatgacggttttttgtggc
ttaacttccgaacaagctacactatatcaacaattagtagatgaatctttagtagcaatt
gaatctgcggaagggttacaacgtcgggggatgattttaggattattagtgaagctaaaa
cagatatgtaatcatccttctcaatatttaaaattaacaactttagaaaaacatcattca
gctaaattacaacgactagaggaaatgttagatgaagttttagtagaagaagaccgcgct
ttaattttcacacaatttgctgaatggggtaaattgctaagaccttatttagaaaggaaa
ttaggacgggaaatattctttttatatggtagtaccagcaaaaaacaaagagaagaaatg
attgatagattccaacatgacccccaaggaccaccaattatgattttatcgttaaaagct
ggtggtgtgggcttaaatttaactagggcaaatcatgtatttcactttgatagatggtgg
aatcccgcagttgaaaatcaagccacagacagagtatttagaattggtcaaactcgcaat
gttcaagttcataaattcgtctgtactgggactttagaagaaaaaattaatgatatgata
gaaagtaaaaaacaactcgcagaacaagtagtaggtgcaggagaagattggttaacggaa
atggatacagaccaacttcgcaacttattaatattagatcggaatgcagtcatcgaagaa
gatgaagtttaa
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