Dolichospermum sp. UHCC 0315A: BMF77_00969
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Entry
BMF77_00969 CDS
T06185
Symbol
rnr_1
Name
(GenBank) Ribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dou
Dolichospermum sp. UHCC 0315A
Brite
KEGG Orthology (KO) [BR:
dou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dou03016
]
BMF77_00969 (rnr_1)
Enzymes [BR:
dou01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BMF77_00969 (rnr_1)
Transfer RNA biogenesis [BR:
dou03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BMF77_00969 (rnr_1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
QEI40403
UniProt:
A0A5C0DPP1
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All DBs
Position
complement(1047535..1049595)
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AA seq
686 aa
AA seq
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MDKGTLVEFRVKGDRRLGVIDRPDGKTSWFVVDERGQSHNIKNNQFTYTVNGQTYKPGEI
AEFLSQVQPYLDPSSLEIAWELLIEDGETVTPSQLANLLFSESTPPQCYAAHCLLSEDKL
YFKQKGDAYEPRSAAQIAERKHQIQVESQKAKGQQEFLARIEQALQGQVVEWQRLDRQRL
DALEKYATLLADVVMLKVNYDSLARACPPPASVLETMNMLGRSATPQAAFQLLIDLGLWT
SHENLFLRRSSISVQFPHQVLEVAQECWDFPPTDLDTNRLDLTHLKVYTIDDESTTEIDD
GLSWEILPDGKERLWVHIADPTRLLMPDDELDLEARKRGSTVYLPTGMIPMFPEVLATGP
MSLIQGKVCCALSFGVILDAVGAVEDYCIHTGLIKPTYRLTYQDVDEMLELGVQAEPEIE
AIANWAKIRKTWRYSQGAISINMPEAMIKVKDDDINIDVLDDSSSRQLVAEMMILAGEVA
ARYGQTHNIPLPFRGQPQPELPPEEELLLLPAGFVRSCAMRRCMPKSEMSITPVRHAGLG
LDTYTQATSPIRRYSDLLTHFQLKAHLRGEGLPFSAEQLKEVMMTVSSITQEATMVERQT
NRYYALEYLRRHPEQVWQVTVLMWLREDSNLGLILLEDLGLQLPMSFRRSVSLGENLLVK
VSLADPQKDMIHFQEIMYQEAQSVTN
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtggataaggggacgttagttgaatttagggttaaaggcgatcgccgtcttggagtgata
gatcgtccagacggtaaaactagttggtttgtagtagatgaacgtggtcaatcccataac
atcaaaaataaccaatttacctacacggttaacggacaaacctataaaccaggggaaatc
gctgagtttttaagtcaagttcagccttatctagacccatcaagtctggaaatagcttgg
gaactactgattgaagatggagaaactgtcactcctagccaattggcaaatctgctattt
tcggaatccacacctccccagtgttatgcagcccattgtttgttatcagaagataaactc
tatttcaaacaaaaaggagacgcttacgaaccccgcagcgcagcgcaaatagcagaacgc
aagcaccagattcaagtagaatcacaaaaagccaagggacagcaggaatttttagcccgg
atagaacaggcgctccagggacaagtggtagaatggcaaagactggatcgccagcgttta
gacgcattagaaaaatatgcgactttgctggcggatgtggtgatgctgaaagtgaactat
gattctttggctcgtgcttgtccgcctccagcctcagtattagaaactatgaatatgctg
ggacgttctgctacgccccaggcggcctttcaactcttgatagatttgggtttgtggact
tcccacgaaaacctgttcctgcgccgttcatcaatttccgttcaatttcctcatcaggta
ttagaagtggcgcaagaatgttgggattttcctcctacagatttagatacgaaccgtctc
gatctcacacatctcaaggtatataccattgatgatgaaagcactacagaaatagacgat
ggtttgagttgggagatattaccagatggtaaggaacggttatgggtgcatattgctgac
ccgacgcggttattaatgccagatgatgagttggatttggaagccagaaaacggggtagt
acagtgtatttacccacggggatgattcccatgttcccagaggtgttggccacaggtccc
atgagtttaattcaggggaaagtctgttgcgccctcagctttggggtgattttagatgca
gttggggctgtggaagattactgtatacacactggtttaattaagcctacctaccgcctc
acctatcaagatgtggatgagatgctggagttgggagttcaagcagaaccagaaattgag
gcgatcgctaattgggcaaaaatccgcaaaacttggcgttatagtcaaggtgctatcagt
atcaatatgcccgaagcgatgatcaaagtcaaagacgatgatatcaatattgatgtttta
gatgattcttcgtctcggcaattagtagcagaaatgatgattcttgctggagaagtggcg
gcgcgttacggacaaactcataatatcccgctgccctttcgcggtcaacctcaaccagaa
ttacccccagaggaagaactgctcctgcttccagccggtttcgtccgttcctgtgcgatg
cgtcgctgtatgcctaaaagcgaaatgagcattacaccagtgcgccatgctggtttgggt
ttagatacctacactcaagctacttcccccattcgtcgttatagcgacttactcacccac
ttccaattaaaggcacatttacgcggcgaaggtttacccttctctgctgaacaactcaaa
gaagtgatgatgacggtcagcagcatcactcaagaagcaacaatggtggaacgacaaact
aatagatattacgctttagaatatttacgtcgtcatcctgaacaagtttggcaggtaacg
gtattaatgtggttacgagaagatagcaatttaggactaattttattagaagatttgggt
ttacaattgcctatgtccttccggcgttctgtcagtttgggagaaaatttattagtgaaa
gttagtttggctgatccccaaaaagatatgattcacttccaggaaattatgtatcaggaa
gcccaatcagttacgaattag
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