Desulfosarcina ovata subsp. sediminis: DSCO28_01040
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Entry
DSCO28_01040 CDS
T06286
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
dov
Desulfosarcina ovata subsp. sediminis
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dov03016
]
DSCO28_01040
Enzymes [BR:
dov01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
DSCO28_01040
Transfer RNA biogenesis [BR:
dov03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
DSCO28_01040
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
BBO79538
UniProt:
A0A5K7ZBJ1
LinkDB
All DBs
Position
111695..112267
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AA seq
190 aa
AA seq
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MPKPLRAFVAVPLPAPVIDFLQQIQQQLHSPMINVRWVRPENIHLTLKFLGDIEPSQVPV
IGAQLDAAAVSTPAFTLNARGVGVFPNRRKPRVLWVGLDGETGMLKTLQTTVETVLAAVG
FKREKRAFRAHLTIGRPRKRMDPDDLGGSLDRLQTAASAPFRVGRVCLYQSVLKPSGAEY
TVLYSAPLSD
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaacccctgcgtgcctttgttgccgtaccgctacccgcgccggtgatcgatttc
ctgcagcagattcagcagcagctgcattcgccgatgatcaacgtccgctgggtgcgtccc
gaaaacatccacttgacacttaaatttttaggtgacattgagccatcgcaggttcctgtg
atcggcgcacaactggatgccgctgccgtttccacgcccgcttttacattgaacgccagg
ggtgtcggcgtttttcccaaccgacggaagccccgggtgctgtgggtggggctggacggg
gaaaccgggatgctgaaaacgttgcagacaaccgttgaaacggtcctggccgcggtcgga
ttcaaaagggaaaaacgcgcctttcgtgctcacctgaccatcggccggccccgcaaacgc
atggatcccgacgaccttggcggatctttggatcggctgcagacagcggcctcggcgcct
ttccgggtcggccgggtttgcctgtaccaaagcgtgttaaagccgtccggagcggaatat
accgtgttgtacagcgcccccctatcggattaa
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