Desulfosarcina ovata subsp. sediminis: DSCO28_01250
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Entry
DSCO28_01250 CDS
T06286
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dov
Desulfosarcina ovata subsp. sediminis
Pathway
dov03030
DNA replication
dov03430
Mismatch repair
dov03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSCO28_01250 (dnaE)
03430 Mismatch repair
DSCO28_01250 (dnaE)
03440 Homologous recombination
DSCO28_01250 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dov03032
]
DSCO28_01250 (dnaE)
03400 DNA repair and recombination proteins [BR:
dov03400
]
DSCO28_01250 (dnaE)
Enzymes [BR:
dov01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DSCO28_01250 (dnaE)
DNA replication proteins [BR:
dov03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DSCO28_01250 (dnaE)
DNA repair and recombination proteins [BR:
dov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DSCO28_01250 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HHH_3
Motif
Other DBs
NCBI-ProteinID:
BBO79559
UniProt:
A0A5K7ZIH8
LinkDB
All DBs
Position
135354..138902
Genome browser
AA seq
1182 aa
AA seq
DB search
MSQPATSDFVHLHVHTQYSLLDGAIRLGDLFKKVKEFGMPAVALTDHGTMFGALDFYQQA
TSAEINPIIGCECYVAPRTLADKTPLDKQGTRHLVLLAENQTGYRNLCKLASVAQMEGYY
YKPRIDKTILAEYAEGLIALSACLKGDIPQHILAGHMDEAEAAALYYQKIFGEGNFFLEL
QHNGIPAQEKVNQGLVELSGRLSIPLVATNDCHYLNRQDAKAHEILLCVQTQKVITDSDR
FVFDSDQLYFKSPEEMKSYFSDYPGAIENTVAIADRCSIEFDFNTYHFPQFDPQSGKTAD
QLFDEMVREGYERRMAVIRENTLDLDESVYRERLEYEIKTIKDMGFPGYFLIVADFIGYA
KQNGIPVGPGRGSAAGSLVSFALFITDLDPIEHGLIFERFLNPSRISMPDIDVDFCIHGR
ERVYNYVVQRYGGGDYVAQIITFGKMKAKLVIRDVGRALGLPLAEVDTIAKLIPDSLKMT
IDKALKEEPKLAEMVDADPRIKELIDISRSLEGLSRHASTHAAGVVIGDKPLVEYLPLYK
GKKGEVVTQFDMKKVEDIGLVKFDFLGLRNLTVIDNALKSIDAQGKDVPDLAHLPFDDEK
TYDLLQSGDTTGVFQLESSGMKNLLVRLHPESFGDLTALVALYRPGPLDSGMVDDFVDRK
HGRKEVVYPVDSLAPILEETYGVIVYQEQVMQVAGVLAGYTMADADSLRKAIGKKIEALM
AKHREKFVDGAVENGVDRKVATELFDLIEKFGGYGFNKSHSAAYALIAYQTAYLKAHFPV
EFMAALLTSEIDTIDGVVKFINECRSHGIEVLPPDINESATVFTAVEGRIRFGLAAVKNV
GEAAVDLIIKEREESGPFTSIFDFCQRVDLTKVNKRVLESLIRCGALDSTGVYRSRLMAV
LEEALDYGQRIQREKNSAQMSLFDMGGGQEMTLNLPVVPNIDEWDDHEKLQQEKETLGFY
VTGHPLDRYRPIMEKFTNVDAISIREVADKSAVRIGGTISSAKVIRTRKEELMGFATVED
LNGGVEVVVFPSLYSSCADLLSVDTAVLVQGVAQVEENGVKILADEIIPMEAAEETWTVE
VRLMVDPESTSRETLTQVQKALKRYPGACRGYVHICLKDQAEAVISMTEDLRIRYCDAMT
REVNAILGYDAVQTRCSDAVSAMRSSDANNGRRGNGRSYARN
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgagccagccagccacttccgattttgtccatctgcatgtgcacacccagtacagtttg
ctcgacggcgccatccggctcggcgatctgtttaaaaaagtcaaggaattcggcatgccg
gccgtggccctgaccgaccacggcaccatgttcggcgccctggatttttaccagcaggcc
acatcggccgagatcaatccgatcatcggctgtgagtgctacgtggcccccaggaccctg
gcggacaagacccctttggacaagcagggcacccggcatttggtattgctggccgagaat
cagaccggctatcgcaacctgtgcaaactcgcctccgtggcccagatggaaggctactac
tacaagccgcgcattgacaaaacgatcctggccgagtacgcagaagggctcatcgccctg
tcggcctgcctgaagggggatatcccccagcatatcctggccggccacatggacgaggcc
gaagcggcggcgctttactaccagaagatattcggcgagggcaattttttcctggagctg
cagcacaacggcatcccggcccaggaaaaagtcaaccagggcctggtcgaactgagcggc
aggctttccattccgctggtggccaccaatgactgccattacctcaaccggcaggacgcc
aaggcccacgagatcctgctctgtgttcagacccagaaggtcatcaccgacagcgaccgt
ttcgtcttcgactccgaccagctttacttcaagtcgcccgaggagatgaagagctatttc
agcgactatcccggggccattgagaacaccgtggccattgccgaccgctgcagcatcgag
ttcgatttcaacacctaccactttccccagttcgatccccaatcgggaaagaccgccgac
cagttgtttgacgaaatggtacgtgaggggtacgagcggcgcatggccgtcattcgcgag
aatacccttgacctggacgaatcggtctatcgcgagcgcctggaatacgagatcaagacc
atcaaggacatggggtttcccggctattttctcatcgtggccgactttatcggctacgcc
aagcaaaacgggatcccggtgggccccggccggggatcggccgccggcagcctggtctct
ttcgccctgttcattaccgacctggatcccatcgagcacgggctgatcttcgagcgcttc
ctcaacccgtcgcgtatcagcatgcccgacatcgacgtggatttctgcatccacggccgg
gagcgggtttacaactacgtggtccagcgatacggcggcggtgattatgtggcccagatc
atcaccttcggcaaaatgaaggccaagctggtgatccgggacgtgggccgtgccctggga
ttgcccctggccgaggtggataccattgccaagctgattcccgacagtctcaagatgacc
atcgacaaagccctcaaggaggaacccaagctggccgagatggtcgacgccgatccacgg
atcaaggaattgatcgacatcagccggtcccttgaggggctctcccgtcacgcctcgacc
cacgcggccggtgtggtgatcggcgacaaacccctggtggagtacctgcccctgtacaaa
gggaaaaagggcgaggtggtcacccagttcgatatgaaaaaggtcgaggatatcggcctg
gtgaaattcgactttctggggctgcgcaacctgaccgtcatcgacaatgcgctcaagagc
attgacgcccagggcaaggacgtccccgatctggcccatctgccctttgacgatgagaaa
acttacgacctgctgcagtccggcgacaccaccggcgtgttccagctggaatccagcggc
atgaagaacctgctggtgcgccttcatccggagtcgttcggcgatcttaccgccctggtg
gcgctataccgtcccggaccgctggacagcggtatggtggacgacttcgtggaccgcaag
catggccgcaaggaggtggtctacccggtcgacagcctggccccgattcttgaggagaca
tacggggtcattgtttaccaggagcaggtcatgcaggtcgccggtgtcctggcggggtac
accatggccgatgcggacagcctgcgcaaggccatcggcaagaagatcgaggcattgatg
gccaagcaccgtgagaagtttgtcgacggtgcggttgaaaacggcgtggaccggaaagtg
gccaccgagttgttcgacctgatcgagaaattcggcggctatggttttaataaatcccac
agtgccgcctacgccctgatcgcctatcagaccgcctatctcaaagcccattttcccgtt
gagttcatggccgccctgctgaccagtgaaatcgacaccattgacggggtggtcaagttt
atcaacgaatgccgcagccacggcatcgaagtgcttccaccggacatcaacgagagtgcc
acggtgtttaccgctgtggagggacgcatccgtttcggccttgccgccgtcaagaatgtg
ggcgaggcggcggtcgatctgatcatcaaggaacgcgaagagagcggacccttcacatcg
attttcgatttctgccagcgcgtggacctgaccaaggtaaacaaacgcgttctcgagagc
ctgattcgctgcggtgcgctggactccaccggtgtttaccgctctcggttgatggccgtt
ctggaagaggccttggactatggtcaacgcattcagcgggaaaaaaacagtgcccagatg
agccttttcgatatggggggcgggcaggagatgaccctcaacctgccggtggttcccaac
attgacgagtgggacgatcatgagaaactgcagcaggaaaaggagacattgggattttac
gttaccggtcacccgctggatcgttatcggccgatcatggagaaattcaccaatgtggat
gccatcagcattcgggaggttgccgacaagagtgccgtgcgcatcggcggcaccatcagc
agtgccaaggtgatccgtacgcgcaaggaagaactcatgggatttgccaccgtcgaggat
ttgaatggcggggtagaagtcgtggtcttcccgtcgctctactccagttgcgccgacctg
ttgagcgtggatacggcggtgttggtccagggcgtggcccaggttgaggaaaatggggtc
aagattcttgccgatgagatcattcccatggaggctgccgaggagacctggacggtcgag
gtgcgtctgatggtcgacccggagagcaccagtcgcgaaaccctgacccaggtacaaaaa
gccctcaaacgctatccgggggcctgccgcggctacgtgcatatctgcctgaaggatcag
gccgaagccgtgatatccatgaccgaggacctgcggatccgttattgcgacgccatgacc
cgcgaagtcaacgccattttgggctacgatgccgtccagacccggtgcagcgatgcggtc
agtgccatgcgcagcagtgatgcaaacaacggccgccggggcaacggccgctcatacgcc
cgcaactga
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