Desulfosarcina ovata subsp. sediminis: DSCO28_07030
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Entry
DSCO28_07030 CDS
T06286
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dov
Desulfosarcina ovata subsp. sediminis
Pathway
dov02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DSCO28_07030 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dov03021
]
DSCO28_07030 (rpoD)
Transcription machinery [BR:
dov03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DSCO28_07030 (rpoD)
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Exonuc_VII_L
Sp-DndD
Motif
Other DBs
NCBI-ProteinID:
BBO80137
UniProt:
A0A5K7ZJI3
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Position
776719..778581
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AA seq
620 aa
AA seq
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MTKQSDDKRKAASIREEKKTAQKPVEAAGDAAVQDVKSEKSKPLSKKSNQKALKALIEKG
KEQGSLTYDEINEALPNEMMSSEMIDDTLMMFDDMDIEIIENEDGIPGKDSTPEKKEALS
KAVSVSDFGSVTDPVKMYLREMGMVTLLSREGEVEIAKKIEEGEQDVLKALLETSLGVKY
ILEFGDLIEKGALRPKHVLRDVDEGDAYVDEMVQIDNFLNTITEIRKVDEENQQYRERMF
TEQLDPDEARRVRRCIMRRNNKIFDLLKGWRLEGGVIDRIEAHIRRLIDWFDAQNRLVAT
TAEAMGTTIRELRENIEEKSGFLAWARVKSSLDDAALGRIYDHLRSVSDLLVEKENDFKA
NNRNLKRVMASVDEGRLRAKFAKSELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQE
FGREPRPEEIAEKMEIPIDKVRKVLKIAREPISLETPIGEEEDSHLGDFIEDKKFMLPSE
AAVSMNLAEQTRKVLATLTPREEKVLRMRFGIGEKADHTLEEVGQDFTVTRERIRQIEAK
ALRKLRHPTRSRKLKSFIDN
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaacaatccgatgataagcgcaaagcagcatccatccgggaggagaaaaagaca
gctcaaaaaccagtcgaagctgccggtgatgccgcggtccaggacgtaaaatcggaaaaa
tcaaaacccttgagcaaaaagagcaaccagaaggcgcttaaagccctgattgagaaaggc
aaggaacagggctcattgacctatgacgaaatcaacgaggccctgcccaatgaaatgatg
tcatcggagatgatcgatgacaccttgatgatgttcgacgacatggacatcgaaatcatc
gaaaatgaagacgggattcccggtaaggacagcacgcctgaaaaaaaggaggccttgagc
aaggcggtatcggtatcggattttggatcggtgaccgatccggtaaaaatgtacctgcgt
gagatggggatggtgaccctgctcagccgtgaaggtgaagtggagattgccaagaaaatc
gaagagggtgagcaggatgtgctcaaagcccttctggaaacctcactgggcgttaaatac
atcctggagttcggcgatctgatcgaaaagggggcgcttcgccccaaacacgttttgcgc
gatgtggatgagggagacgcgtatgtggacgagatggtccagattgacaacttcctgaat
accattaccgaaatccgcaaggtcgatgaggaaaaccagcagtatcgggaacgcatgttc
accgaacagctggatcccgatgaggcgcgacgggtccggcgctgtatcatgcggcgcaac
aacaagatttttgatcttctcaagggatggcggctggaaggtggcgtgatcgaccgcatc
gaagcgcatatccggcgactgatcgactggttcgatgctcagaaccgcctggtggccacg
acggccgaggccatggggaccaccattcgtgaactgcgcgaaaacatcgaggaaaaatca
gggtttctggcctgggcgcgcgtaaaatcctccctggacgatgccgcccttggacgcatt
tacgatcatctcagatcggtgagcgaccttctggtggaaaaggagaacgatttcaaagcc
aacaaccgcaatctgaaacgggtcatggccagtgtcgatgaaggccgcttgcgggccaag
ttcgccaaaagcgagttgatccgggccaacctcagactggtggtcagcatcgccaaaaaa
tacaccaaccggggattgcagttcctggatctgatccaagagggcaatatcggtttgatg
aaggccgtggataaattcgaataccgccgcgggtataaattttccacctatgccacatgg
tggatccggcaggccattacccgggccattgccgaccaggcccgaacgatccgcattccg
gtgcatatgatcgaaaccatcaacaagctgatccggacctcgcgttatctggtacaggaa
ttcggtcgcgaaccgcgccccgaagaaattgccgagaagatggaaatccccatcgacaaa
gtccgcaaggtgctcaaaatcgccagagaacccatcagtctggaaacccccattggggag
gaggaagacagtcatctgggtgatttcatcgaagacaaaaaatttatgttgccttctgag
gcggcggtcagcatgaacctggccgaacagacccgtaaagtgctggcgacccttacccca
cgcgaggagaaggtgctgcgcatgcgttttgggatcggtgaaaaggccgatcataccctg
gaagaggtgggacaggattttaccgttacccgggaacggatccgtcagatcgaggccaaa
gccttgagaaaactgcgccatcccacccgtagccgtaagctgaagagttttatcgacaat
taa
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