Desulfosarcina ovata subsp. sediminis: DSCO28_09070
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Entry
DSCO28_09070 CDS
T06286
Symbol
ihfB-1_1
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
dov
Desulfosarcina ovata subsp. sediminis
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dov03032
]
DSCO28_09070 (ihfB-1_1)
03036 Chromosome and associated proteins [BR:
dov03036
]
DSCO28_09070 (ihfB-1_1)
03400 DNA repair and recombination proteins [BR:
dov03400
]
DSCO28_09070 (ihfB-1_1)
DNA replication proteins [BR:
dov03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
DSCO28_09070 (ihfB-1_1)
Chromosome and associated proteins [BR:
dov03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
DSCO28_09070 (ihfB-1_1)
DNA repair and recombination proteins [BR:
dov03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
DSCO28_09070 (ihfB-1_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-CCDC81_bac_2
HU-HIG
HU-DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
BBO80341
UniProt:
A0A5K7ZHK8
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Position
complement(966158..966442)
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AA seq
94 aa
AA seq
DB search
MNKGDLIEALKRKNGFTREKAEQIIDLFFGEMTNALVNGDRVEIRGFGSIFVKDYGSYRG
RNPKTGESVIVKSKRLPFFRCGKELKERVDTFKR
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaggggacctgatcgaggcgctgaaaagaaaaaacggatttacccgtgaaaag
gcggagcagatcattgaccttttttttggtgaaatgaccaatgccctggttaacggcgac
cgggtggaaatcaggggctttggcagtatttttgtcaaggactacggctcctacaggggg
cgcaaccccaaaaccggtgagtcggtgatcgtaaaatccaagcggctgccgtttttcagg
tgcgggaaggaactgaaggaacgggtcgatacgtttaagcgctga
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