Desulfosarcina ovata subsp. sediminis: DSCO28_09700
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Entry
DSCO28_09700 CDS
T06286
Symbol
recD
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
dov
Desulfosarcina ovata subsp. sediminis
Pathway
dov03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DSCO28_09700 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dov03400
]
DSCO28_09700 (recD)
Enzymes [BR:
dov01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DSCO28_09700 (recD)
DNA repair and recombination proteins [BR:
dov03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DSCO28_09700 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
SH3_13
Viral_helicase1
NAT10_TcmA_helicase
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
PhoH
PIF1
Flagellin_IN
AAA_28
DEAD
T2SSE
TraI_hel_assoc_N
AAA
Motif
Other DBs
NCBI-ProteinID:
BBO80404
UniProt:
A0A5K7ZGE0
LinkDB
All DBs
Position
complement(1029365..1031338)
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AA seq
657 aa
AA seq
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MRTDENLIDLFDAWVEQGWATPLDRAFVRFLQAQQPESPEPLLLAAGLASYQLGRGHICL
DLKAVLDDPDGVLSWPPEGDAPTDGLRPPKILLAGLTVKKWAESMQASDLVSTGEGTTPL
VFSNGRLYLRKYWQYETEVAQGILKRLQMQPAAPTDLASRIDRLFGPLRSAEEQTKNDVH
WQSVAAAIAAQSAFSVISGGPGTGKTTTVVQLLALLQDIALAQGNPLRISLAAPTGKAAA
RLTESIGAAVAKLPEALRNSIPIEVTTLHRLLGSRSHTRHFVHNAQNPLHVDLLVVDEAS
MIDLEMMAALLRALPETARLILIGDKDQLASVEAGSVLGDLCRNAERAAYQQPTIQWIAD
NTGYDLNPYAGSGTPLDQHIAILRKSYRFDQNSGIGALARAVNAGDSGRVAAVWQQDFDD
IDRLAVTSTDENGFAHLVLDGAPFDSHGGYRAYLQYVYAGAQSHASEDAWLQAILDAFGR
FQLLSPLRKGPWGVEGLNRKAAQILFNADLINRQEGWYAGRPVMITRNNYTLGLMNGDIG
IVLPFAERKAPDQVTLRVVFPMADGSFKKVLPSRLSDVETAYAMTVHKSQGSEFDHAAMV
LPESMTPVLTRELIYTAVTRARHYFTSVEPKSDLLSEAVQQRTYRASGLAALFSVAY
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacggatgagaatttgatagacctttttgacgcctgggtcgaacagggctgggcc
acgccgctggatcgtgcatttgttcgatttctacaggcacagcagccggaaagcccggaa
ccgttattgctcgccgccggtcttgccagctatcaattgggccgggggcacatttgtctg
gatctgaaggcggttttggatgacccggacggcgttttgtcatggccgccggaaggggac
gcgccaacggacggtctccgtccgcccaagatcctgctggcgggactgacggtaaagaag
tgggccgaaagtatgcaggcttcagatctggtatccaccggggagggcacgacaccgctg
gtgttcagcaatgggcggctttatctgcgcaagtactggcaatacgagaccgaagtggcg
cagggcattttaaaacgacttcagatgcagccggccgcaccaacggatctggcaagtcgg
atcgatcggttgttcgggcccttgcgcagcgcggaggagcagaccaaaaacgatgtgcac
tggcaaagtgtggcggcggccattgcagcgcaaagtgccttcagtgtcatatccggcggg
cccgggaccggcaaaaccaccacggtggttcagctcctggcgctcttgcaggacatcgcc
ctggcgcaggggaatccgctgcggatctctttggccgcacctaccggcaaagccgcggcc
cggctgaccgagtccatcggcgctgcggtggcaaagctgccggaagcgctgcggaatagc
attcctattgaagtcaccacgttgcaccggttgctgggcagccggtcccatacgcgccac
tttgtccataacgcgcaaaaccccctgcatgtcgatcttttggtggtggatgaggcctcc
atgatcgatctggaaatgatggcggcccttttgagggctttgcccgaaaccgcgcgcctg
atcctgatcggcgataaagaccagcttgcatcggtggaggccgggtccgtgctgggcgat
ctgtgccgcaatgcggagcgggccgcctatcaacagcccaccattcaatggatagcggac
aataccggctacgacctgaatccatacgccggcagcgggacgccgctcgatcagcatatc
gccatcctgcgcaaaagctaccgcttcgatcagaacagcggcatcggtgcgctggcccgc
gcggtcaatgccggcgattcggggcgggtcgctgcggtatggcagcaggatttcgatgac
attgaccggttggcggtaacctcaaccgacgaaaatgggtttgcccatctggtgctggac
ggcgcgccattcgattcccatgggggatatcgcgcctacctgcaatatgtttacgccggc
gcccagagccatgcatccgaagatgcctggttgcaggcgatcctggacgctttcggccgt
tttcagttgctctccccgttgcgcaaaggcccctggggcgtagaagggctgaatcgaaaa
gcggctcaaattctttttaacgcagacctcatcaaccggcaggagggttggtatgcgggc
cgccccgtaatgatcacccgcaacaactacaccctgggattgatgaatggagatatcgga
atcgttctgccttttgccgagagaaaggctccagatcaagtgacgttacgagtggtgttt
cccatggccgacgggtctttcaaaaaagtattgccgtctcgattaagcgatgtcgagacc
gcgtatgccatgacggtgcacaaatcccaggggtctgaatttgaccatgccgccatggtg
ctgccggagtctatgacgccggtattgactcgggaactgatttacaccgctgtaacacgt
gcacgccactatttcacgtcggtggagccaaaatcggatctactgtctgaagcggtgcaa
caacgtacgtaccgcgcctcgggcctggcggctcttttttcagtagcttattga
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