Desulfosarcina ovata subsp. sediminis: DSCO28_09710
Help
Entry
DSCO28_09710 CDS
T06286
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
dov
Desulfosarcina ovata subsp. sediminis
Pathway
dov03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DSCO28_09710 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dov03400
]
DSCO28_09710 (recB)
Enzymes [BR:
dov01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DSCO28_09710 (recB)
DNA repair and recombination proteins [BR:
dov03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DSCO28_09710 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_30
AAA_11
ResIII
Selenoprotein_S
Motif
Other DBs
NCBI-ProteinID:
BBO80405
UniProt:
A0A5K7ZJK8
LinkDB
All DBs
Position
complement(1031325..1035023)
Genome browser
AA seq
1232 aa
AA seq
DB search
MAYPLNTLTFPLHGNRLIEASAGTGKTYTIAALYLRLVLGHGGENGFVRPLTPPEILVVT
FTNAATEELRDRIRCRLTEAAAFFRRQGSGDEYLLSLREAFPEPQWPAKARQLEQAAQWM
DESAIFTIHSWCQRMLRQHAFDSGSLFDLELETNEQPLLEEAACDYWRKYFYPLPAALLG
ELLESIHCDTPQALLDQVRPLLNLPLPSPEDPFDILARRQAAIETARLCWQNDFDAAVAK
LRDAQARKILSGVKYRAASLANWIDQLSVWVKGEGPLPKADVLGKLSQKGLREGINKNKT
APEHPAFSAFDRLIDQLAELVMDEALLVHAAWDIGCRFRQAKHRQAQMGFDDLLSMLQKA
LQAPGGQQLAAIIRTQFPVVLIDEFQDTDPVQYDIFSNVYLEQPDTGLLMIGDPKQAIYA
FRGADIHTYLRARKDTGTRHYTLEKNYRSTNALIDAVNQIFSFADPHAQGAFLFNDQIPF
HPVKAQGGKGQSIVDGEPLNGLHIWQLPQTGPVKKTGEDGYIEQMARSAASEIVRLLNLS
QQQPPRAGFEPPDGGALQPLRPADIAILVRNQNEARAIRRALDARHVRSVYLSDKDSVFA
CDEATSLLYWLRACAEPEQERLLRAALATPVLNLPLTRLEQFNRDELAWEAEVERFRRYQ
RVWQRQGILPMLRMLLGDFDVAARLLSLTDGERAITNLLHLAEMLQTAAADLDGEHALIR
WLAEQIEQPGSGAEEQILRLESDDDLVRVITVHKSKGLEYPLVFLPFICSFQDPTRRILS
VARYHDDQGRLVTALNPGPDAIEAIDNERLAEDVRLLYVAVTRARFACWLGVGVVGKVTQ
KDGEQTKLHQTGLGYLLSAGQMILTGEFPQRLQALKGDSNAITLSPLPGATDAVYRFEDK
SPQLDPALGFGGNVSRDWRISSYSSMLAGAQMKARAPLEPAVAPPSPVGDGAPSAPESAA
EEQLQEAAAEAATARGAMGADPSIHGFPRGPDPGTFLHGVLEWAADQGFANLVQDSRRCE
EQLAVYCQRRDWGKWAPVMQKWLKHLLQTPLLLPDGQGTVAMSALAGDGYQAELEFMLAA
HRVDTRFLDQTIACDVFSGAMRPELNRDRLNGMVKGFIDLVFCHQDRYYVLDYKSNYLGE
NQQAYSAEAMATAMLEHRYDLQYVLYTLALHRLLKARLPDYSYRHHMGGVLYLFLRGVGT
DGQGVFSDKPSQALIETLDEHFAGKETLHAHG
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atggcttatccactcaatacgctgacctttcccctgcacggcaatcgattgatcgaagcc
agtgccggcaccggcaagacctacaccattgcggccctgtacctgcgtctggtgctgggg
catggcggtgagaacggctttgtgcggccgttgacgccaccggagattttggtggtgacc
tttaccaatgcggccacggaagagctgcgcgaccggatccgctgccggctgaccgaggcg
gccgcctttttccgcaggcaaggcagcggtgacgagtacctgctctccttgcgcgaagcg
ttcccggagccccagtggcccgccaaggcaagacagttggaacaggcggcccaatggatg
gacgaatcggccatcttcaccattcactcctggtgccagcgcatgcttcgccagcacgcg
tttgacagcggcagcctgtttgatctggagctcgaaaccaatgaacagccgctgctggaa
gaggcggcttgtgattactggcgcaaatacttctatcctctgccggccgcgcttctgggt
gagctgttggaatcgatacactgcgacacgccccaggccttgctcgatcaggtgcgcccc
ctgctcaatctgccgctgccatcgcccgaagatcctttcgacatcctggcccgtcgccag
gccgccattgaaaccgcgcgcctctgctggcagaacgatttcgatgccgccgtggcgaaa
ttgcgcgatgcacaggccaggaaaatcctcagcggcgttaaataccgtgcggcctccctg
gcaaattggatcgatcaattatccgtctgggtgaaaggggagggcccgttacccaaagcg
gacgtattgggcaaactgtcacagaaaggactgcgggaaggcatcaataagaataaaacc
gcccccgaacatcccgccttttcagcttttgaccggcttatcgaccaactggccgaactg
gtaatggatgaggcgctattggtccatgccgcctgggacattggctgccggttcaggcag
gccaagcaccgtcaggcccagatggggtttgatgacctgctcagcatgcttcaaaaggcc
ttgcaggcacccggcggtcagcaattggccgccatcatccgcacccagtttcccgtggtg
ttgatcgacgagttccaggatacggacccggtacagtacgacattttcagcaacgtctac
ctggaacagcccgacaccggcctgctgatgatcggtgatcccaagcaggccatctatgcc
tttcgcggtgcagatattcatacctacctgagagcgcgcaaggacaccgggactcgccac
tacacactggagaaaaactaccgctccaccaatgctctgatcgacgctgtgaaccagata
ttctcatttgcggacccacacgcccaaggggcctttttgttcaacgatcagatcccgttt
cacccggtaaaggcccaggggggcaaaggacagtccattgtggacggcgagcctctcaac
gggctgcacatctggcagcttccccaaaccgggccggtgaaaaagaccggcgaagacggc
tatatcgaacagatggcccggtccgccgccagtgaaattgtgcgcttgttgaatctgtct
cagcagcagcccccccgggccggcttcgagccacccgatggcggtgcgttgcagcccttg
cggccggcggatatcgccattctggtccgcaatcaaaacgaagcccgcgccattcgccgc
gcgctggatgcgcggcacgtgcgcagcgtttatctttccgacaaggactccgtctttgcc
tgcgatgaagccacctctctgctgtactggctcagggcctgtgccgagccggagcaggag
cgcctgttaagagccgccctggcgacaccggttttgaacctgccgctgacacgcctggag
cagttcaatcgggatgagctggcctgggaggctgaagtggagcgatttcgccggtatcag
cgtgtctggcagcgccagggaatactgcccatgctgcggatgctcctgggggattttgat
gtggcggcccgtttgctctccctgaccgatggtgagcgcgccatcaccaatttgcttcac
cttgcggaaatgctgcagactgccgcagccgacctggatggcgagcacgccctgatccgg
tggctggccgaacagatcgagcaacccggcagcggcgcggaggagcagattctgcggctg
gaaagcgatgacgatttggtccgggtcataacggttcacaagtccaaggggctggagtat
cctttggtctttttgccttttatttgcagctttcaggacccgacgcgtcgaatcctgtcg
gtagccaggtatcatgatgatcaggggcgtctggtgacggcgctcaatccgggaccggac
gccattgaggccatcgacaacgagcgtctggccgaagatgtgcgcctgctctatgtggcg
gtgacccgtgcgcgatttgcctgctggttgggcgtgggggttgtgggtaaagtcacccag
aaagacggggagcagaccaaactgcaccagaccggactgggctacctgctgtcggccggg
cagatgatcctcaccggggagtttccgcaacggctgcaggcactgaaaggcgatagtaac
gccattaccttgtctccgctgcccggcgccacggatgccgtttatcgcttcgaagataaa
tccccacaattagacccggcgttgggattcggcggcaatgtgtcccgcgactggcggatc
agcagttacagcagcatgctggccggcgcccagatgaaggcccgggcaccgttggaacct
gccgtggcaccgccatcgcccgtgggcgatggcgcgccttcagcccctgaatcggcggcc
gaagaacagttgcaggaagctgcggccgaagcagcaacggcgcgaggcgccatgggtgcc
gacccgtcgattcatggatttccccgcgggcccgatccgggcacctttctccatggcgtg
ctggagtgggccgctgatcagggatttgccaatctggtgcaagattcccgccggtgtgaa
gaacagcttgccgtctattgccagcgccgcgattggggcaaatgggcgcctgtgatgcag
aagtggctgaagcatttattgcagaccccgctcttgttgcccgatgggcaggggacggtc
gcaatgagtgccctcgccggcgatggctatcaagcggagctggaatttatgctggctgcc
catcgggtagacacacgatttcttgatcaaaccatcgcctgcgatgttttttccggggcg
atgcgccctgagctgaaccgggatcgcctcaacggcatggtcaaaggctttatcgatctg
gtgttctgccaccaggatcgctactatgtgttggactacaagtccaactatctgggggag
aatcagcaggcctacagcgctgaagccatggcgaccgccatgctggaacaccgttatgat
ctgcaatatgtgctctatacgctggcgctgcaccgattgctcaaagcccggttgcccgat
tacagctaccggcaccatatgggcggtgtgctgtatctgttccttaggggcgtcggtacc
gacggacaaggcgtcttcagcgacaaaccctcacaggcattgatcgagacgttggatgag
cactttgccggcaaggagacgttgcatgcgcacggatga
DBGET
integrated database retrieval system
