Desulfosarcina ovata subsp. sediminis: DSCO28_13990
Help
Entry
DSCO28_13990 CDS
T06286
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dov
Desulfosarcina ovata subsp. sediminis
Pathway
dov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSCO28_13990 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dov03019
]
DSCO28_13990 (rhlE-2)
Enzymes [BR:
dov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSCO28_13990 (rhlE-2)
Messenger RNA biogenesis [BR:
dov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSCO28_13990 (rhlE-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Flavi_DEAD
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
BBO80833
UniProt:
A0A5K7ZR94
LinkDB
All DBs
Position
complement(1507071..1508303)
Genome browser
AA seq
410 aa
AA seq
DB search
MNFKTFNFHPLVAAGIAAAGYENPTPIQAGVIPHIMRGCDLMGLAQTGTGKTAAFVLPIL
QRLAAGDRGSIRSLIIAPTRELAEQIHQAIEILGRPAGVRCVAIYGGVGIHPQIQKLKRA
DIVVACPGRLLDHIRRHSIELTQLETLVLDEADHMLDMGFIPDVRQIFKHLPVNRQTLVF
SATMPHEIRQLAKTFLNDPVTIKIGVTSPADTVSHAFYPVAHHLKTALLLNLLENSNAES
VLVFTRTKHRAKSLGKKLMTAGYQAASLQGNLSQSRRQASLDGFRDGKFKILVATDIAAR
GIDVTRISHVINYDIPSTPDTYIHRIGRTGRAARSGEAYTFITGEDKKMVNAISRAIGSN
IEQRILPTFNYGGTSHNVAYRSRQDKKLHQKKTEERKRHNRRTSMTRSFV
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
ttgaactttaaaacttttaactttcatcctttggtcgccgcaggtattgctgcagcagga
tatgaaaatccaacaccaatccaggcaggcgttattccacatataatgagaggctgcgat
ctgatggggctggcacaaacaggcacgggtaagaccgcagcgttcgttctaccgatactc
cagcgattagcagcgggtgaccgaggatccattcgatcccttataattgcaccgactcgc
gaattggctgaacagatacatcaagcaattgaaatccttggacgtccggcaggtgtcaga
tgcgttgctatttacggaggcgtgggaatccatccgcagattcagaaattgaagcgggca
gatatcgttgttgcctgtcctggccgtcttcttgaccatattcgtcgccatagtatcgaa
cttacccagcttgaaacattggttttggatgaagccgatcatatgctggatatgggattt
attccggatgtcagacagattttcaaacatcttccggtgaaccggcaaacactggtcttc
tcggcaaccatgccacatgaaattcgacaattggccaaaacttttcttaatgatcccgtc
accattaaaattggcgtcacctctcctgccgatacagtcagtcatgcattttatccggta
gcccatcatttgaaaacggcgttgctgctaaatctgttggaaaattcaaatgctgagtcg
gttctggtttttactcgcactaaacatcgcgctaagagcctcggcaagaaacttatgact
gcaggttatcaagccgcatcactgcaaggaaatctttcacagtcgcgcaggcaggcttca
cttgatggattccgcgacgggaaatttaagatcttggtcgccaccgatatcgcagctcgt
ggtatcgatgttactcgtatttcgcatgttattaactatgacattccgtccacacctgat
acatatattcaccggataggacggacaggccgcgcagctcgcagtggtgaagcgtataca
tttattactggcgaagacaaaaaaatggtcaacgcgatcagtcgagcgattggttcaaac
atcgagcaacggatcctgcctacgtttaattacggtggaacatcgcacaatgttgcttat
cgttcgcggcaagataaaaaactgcatcaaaaaaagacagaagaaagaaaaagacacaat
agaagaacatcaatgacaagaagtttcgtataa
DBGET
integrated database retrieval system
