Desulfosarcina ovata subsp. sediminis: DSCO28_20390
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Entry
DSCO28_20390 CDS
T06286
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
dov
Desulfosarcina ovata subsp. sediminis
Pathway
dov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSCO28_20390 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dov03019
]
DSCO28_20390 (rhlB)
Enzymes [BR:
dov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSCO28_20390 (rhlB)
Messenger RNA biogenesis [BR:
dov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSCO28_20390 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BBO81473
UniProt:
A0A5K7ZRF8
LinkDB
All DBs
Position
complement(2206346..2207980)
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AA seq
544 aa
AA seq
DB search
MQVNQVLIEKLITTIRAWFVKPERPGPSEPTDDTGISKVPATSEEKPGAEQKRGRRPRPQ
KHKAPLPAVSGTGEKSSVPAVQKWHRGFFKVPELPDKTRFHDLDLPDPVLHAIADTGFQY
CTPIQAEVLPATLKGRDAFGRAQTGTGKTAAFLVAVLTRLLNNPLRGKRKPGTPRVLIIA
PTRELVLQIADEANLLSAHCPFSIVSVFGGMDYEKQRRKLHGRAVDIIVATPGRLLDFKR
RRDLDLSRVEMLIIDEADRMLDMGFIPDVRQIVYSTPHKDKRQTLFFSATLTPDVTRLSA
SWTRDPITVEIEPEQVAVDTVEQVVYIVTTDEKFALTYNIITRRNLKRVLIFCNRRDETR
RLAEMLERYRINCDVLSGEVPQKKRIRTLDAFKAGKIRVLVATDVAGRGIHIEDMDYVIN
FTLPRDPEDYVHRIGRTGRAGAAGTSISFADEEDSFYLPAIEEFIGRSLHCIPPEEHWTE
LPPAPPRRRKPKPPAGGRPPGGDQPGKRRRRRRPGSGNRDNRNRSGRSASRPGPKPRPKR
KTAP
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggtaaaccaagttttgatagaaaaactgatcaccaccatacgggcctggtttgtc
aaaccggagcgcccggggccatccgaacctaccgacgacaccggcatatccaaagtaccc
gcaacatcggaagaaaaacccggagcagaacaaaaaagaggccggcgaccccggccgcag
aagcataaggccccgttgcccgcggtttccggaaccggggagaagtcatccgttccggcg
gttcaaaaatggcaccgaggtttttttaaggtcccggaactgcctgacaaaacacgcttt
cacgaccttgaccttcccgatccggttctgcacgcgattgccgatacgggctttcagtat
tgtacgcccatccaggccgaggttctgcccgccaccctcaagggacgggatgcctttggc
cgggctcagacgggcaccggtaagaccgccgcatttctggtggccgtgctcacacgactg
ttgaacaatcccctgcggggcaagcgcaagccagggactccgcgggtgctgatcatcgcc
cccacgcgtgaattggtgctccagattgccgacgaggccaacctgctgtccgcccactgc
cctttttccatcgtcagcgtatttggcggcatggactatgagaagcagcgccgaaagctg
cacggccgagcggtggatatcattgtggccaccccggggcgcttgctggatttcaaacgc
cgccgggatctcgatctcagtcgggtggaaatgctgatcatcgatgaggccgaccgcatg
ctcgacatgggcttcatccccgatgtgcgccagatcgtctacagtacgccccacaaggac
aaacgccagacgctttttttcagtgccacgctgacccccgatgtgacccggctgagtgcc
agttggacgcgcgatccaatcaccgttgagatcgaacccgaacaggttgccgtggatacg
gtcgagcaggtggtttacattgtcaccacggacgaaaaatttgccctgacctacaatatc
atcacccggcgcaacctaaaacgggtgcttattttctgcaatcggcgcgatgaaacccgg
cggctggcggagatgctggaacgctaccggatcaactgtgacgttctttccggcgaagtc
ccccagaaaaaacggatccgtacgctggacgcgttcaaggcgggcaagatccgcgtcctg
gtggcaacggatgtggccggccggggaatccatattgaagacatggattacgtgatcaac
tttaccctgccccgcgacccggaagattatgttcaccgcatcgggcgcacgggtagggcg
ggcgctgcgggaacgtcgatcagcttcgccgatgaggaggactcattttacctgccggca
atcgaggaattcatcggccgatcgctgcactgcattccaccggaagagcactggaccgag
ctgcccccggcaccgccacggcggcgcaaaccaaaaccgcctgccggtggccgaccccct
ggcggcgatcaaccgggcaaacgtcggcgcagacggcggccaggcagtgggaaccgggat
aatcggaaccgcagtggccgatccgcttcccgtcccggccccaaaccccggcccaaacgg
aaaacggcaccatga
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