Desulfosarcina ovata subsp. sediminis: DSCO28_25480
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Entry
DSCO28_25480 CDS
T06286
Symbol
rnhB
Name
(GenBank) ribonuclease HII
KO
K03470
ribonuclease HII [EC:
3.1.26.4
]
Organism
dov
Desulfosarcina ovata subsp. sediminis
Pathway
dov03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSCO28_25480 (rnhB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dov03032
]
DSCO28_25480 (rnhB)
Enzymes [BR:
dov01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.4 ribonuclease H
DSCO28_25480 (rnhB)
DNA replication proteins [BR:
dov03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
RNase H
DSCO28_25480 (rnhB)
Elongation factors (archaeal)
DSCO28_25480 (rnhB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_HII
Motif
Other DBs
NCBI-ProteinID:
BBO81982
UniProt:
A0A5K7ZIM8
LinkDB
All DBs
Position
complement(2822982..2823611)
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AA seq
209 aa
AA seq
DB search
MKSDLWAFEIEAWNTGHRCIAGIDEAGRGPLAGPVVSAAVILPENADLPGIDDSKKLTPA
RRNRLYDRLYGVARAIGVGVVDAAEIDRANILQATLRSMAMAVANLCPQPDCLLIDGIFP
IATDLPQKTIKKGDSRSISIAAASIVAKVTRDRIMTQADLLFPEFGFSRHKGYPTQSHRA
AIAQYGCSPIHRRTFKGVREHILKGSRHH
NT seq
630 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcagacctgtgggcttttgaaatcgaggcgtggaatacgggccacaggtgcatc
gccggtatcgacgaggccggccggggtcccctggccggtcctgttgtctctgcggccgtg
attcttccggagaacgccgatctcccgggaatcgacgactccaaaaagctgaccccggcc
cggcgcaaccgcctttatgaccgtctttacggtgtcgcccgggcaatcggggtcggggtg
gtggacgctgctgaaatcgatcgggccaacattttacaggccacgttgcgatccatggcc
atggccgttgccaacttgtgtcctcagccggattgcctgctcattgacgggattttcccg
atcgccacagatctgccccagaaaaccataaaaaaaggggattcccggagcatttccatt
gctgcggcatcgatcgtggccaaagtcacccgagaccggatcatgacccaggcggatctc
ctgtttcctgaattcggtttcagccggcacaagggctatcccacccaaagccatcgtgcc
gccattgctcaatacgggtgcagtcccatccaccggcggaccttcaaaggggtgcgggag
cacatcttgaaaggatcccgccatcattaa
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