Desulfosarcina ovata subsp. sediminis: DSCO28_26670
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Entry
DSCO28_26670 CDS
T06286
Name
(GenBank) hypothetical protein
KO
K10439
ribose transport system substrate-binding protein
Organism
dov
Desulfosarcina ovata subsp. sediminis
Pathway
dov02010
ABC transporters
dov02030
Bacterial chemotaxis
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
DSCO28_26670
09140 Cellular Processes
09142 Cell motility
02030 Bacterial chemotaxis
DSCO28_26670
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
dov02000
]
DSCO28_26670
Transporters [BR:
dov02000
]
ABC transporters, prokaryotic type
Saccharide, polyol, and lipid transporters
Ribose transporter
DSCO28_26670
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_4
Peripla_BP_1
Peripla_BP_3
Peripla_BP_6
ABC_sub_bind
ATPgrasp_N
Motif
Other DBs
NCBI-ProteinID:
BBO82101
UniProt:
A0A5K7ZM71
LinkDB
All DBs
Position
complement(2965884..2967623)
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AA seq
579 aa
AA seq
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MPSLVFIVVMSLFFSLPGYSSAGNEKTVALVMKALSNPFFSKMEKGARIFAQENAIQFEV
FGVDRETDIERQIGIVNNLISRGYGAIVIAPADSKKLVSICKKAIDRGIIVINIDNPLHK
PTLDQQGISIPFVGSDNFAGAYMIGEYVKAKLDGMGRAIVIEGIRGVENADLRKKGFIEA
VTAGSSIEIVASESANWHTDESLSLTADLLAKHPNIDAIFCANDSMALGAIQAIDLMGSL
KKIVVAGYDNIDSVRTEIRNGRIHATIEQHPELMGEYGVHMAWQRLNGLSIPDNRSTPLD
LVTYEHFGKKVAFSISTLRNPFFSIMIQGAKESADLFGMELIVLDAENQDAQQLTDMAET
LNQKVDLLIVNPTNTSCITPGIEYANNEDTPVITVDRKAAGGTVLCHIESDNSQGGKKAA
HFLAQKLGGKGRVIEMEGIPGTSAAHERGAGFNEALKQFVEIKIVHRENAHFDRQTAKAI
TLQILKKDQKVDGVFAHNDNMILGVIDAYEELGIKLPKAMIGFDAIPEALRSIRQGKLTA
TIAQKPQTMGTLAIETAARYFRGEKIKPLILVGISLVKN
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgccttccctggtgtttattgtggttatgtctctgtttttttcccttccaggatattcg
agcgccggaaatgaaaaaacagttgcccttgtcatgaaagcgctgtccaacccttttttt
tcgaaaatggaaaaaggggcaagaatctttgcccaggaaaatgccattcagtttgaagtg
tttggtgttgatcgggagacagatatcgagcggcagatcgggatcgtgaataatctcatc
tccagaggctacggtgccattgttattgcacctgctgattcaaaaaagctggtttccata
tgtaaaaaggcaatagacaggggaatcattgtcatcaatatagataatcccctgcataaa
ccgaccctggaccagcaaggtatctccattccctttgttggttcggacaactttgccggc
gcatatatgattggggaatatgtaaaagcaaaactcgatggcatggggcgggctatcgtc
atagaggggatcaggggggtggaaaacgccgatttgcgcaaaaaaggattcattgaggct
gttaccgcaggaagttcaattgaaattgtcgcgtcggaaagtgccaactggcacactgac
gaatccctgtccctcaccgccgacttactcgccaaacatcccaatatcgatgccatattc
tgtgcaaatgattccatggccctgggcgccattcaggccattgaccttatgggatcactt
aaaaaaatagtcgttgccggatacgacaatatcgattcggtgcgtacggaaatcagaaat
ggccgtatccatgccaccattgaacagcaccctgagctaatgggtgagtatggtgtccat
atggcgtggcaacggctcaatgggttaagcattcccgacaatcgctccaccccgctggat
ttggtcacctacgagcattttggcaaaaaagtggcgttttcgatctcaacgctccggaat
ccttttttctccatcatgatacaaggggcaaaagaatctgccgatctcttcgggatggag
ctgatcgttttggacgctgaaaatcaggatgcccagcaactaactgatatggcagaaacc
cttaatcaaaaagttgatctccttatcgttaatcccacaaacacatcgtgcatcactcct
ggtattgaatatgcgaataatgaagatacaccggtaattaccgtggatcgaaaagctgcc
ggcggaaccgtactatgccatatcgagtccgacaattcccagggcggtaaaaaagcagct
cattttctggcacaaaaattagggggcaaaggcagggttatagagatggaaggaatccca
ggaacttcggcagcccatgagcggggagcaggatttaatgaagctctcaagcaattcgtt
gaaatcaaaattgtccaccgcgaaaacgcccatttcgaccgacaaacggcaaaagccata
acacttcagattttaaaaaaagatcagaaagttgatggggtctttgcccacaatgacaac
atgatccttggtgtaatcgatgcttatgaggaattgggaataaaactgccgaaagccatg
atcgggtttgacgcaattcctgaagcactacgatccattcggcagggcaaactgacggcc
accatcgcccaaaaaccccagaccatgggaaccttggccattgagacggctgctcgctat
ttccggggggaaaaaatcaaacccttaattttggtgggtatttcattggtcaaaaattag
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