Desulfosarcina ovata subsp. sediminis: DSCO28_27160
Help
Entry
DSCO28_27160 CDS
T06286
Symbol
yhaM
Name
(GenBank) HD family phosphohydrolase
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
dov
Desulfosarcina ovata subsp. sediminis
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dov03019
]
DSCO28_27160 (yhaM)
Messenger RNA biogenesis [BR:
dov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DSCO28_27160 (yhaM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
HDOD
tRNA_anti_2
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
BBO82150
UniProt:
A0A5K7ZQP7
LinkDB
All DBs
Position
3031002..3031967
Genome browser
AA seq
321 aa
AA seq
DB search
MPKPFVSELVAGNAVDAVFLLAERNMAHKKDGNPFLTVTLADRTGQVKGVVWDQVERIAA
AVTEGDFVHVRAQVGEYRGGLQMVVKDMLRVPADQVDPADFLPTTSRDVGKMFDRLREMT
GRMQNPHLKRLFEVFWADDEFVAAYTRAPAAKMMHHAYIGGLLEHTLSMAVLAGMVAGHY
SGVDRDLLLAGVILHDVGKVRELEYARRIDYTDEGRLLSHIIIGLSMLDEKLGQVPDFPP
VQAQLLKHMIVSHHGSRAFGSPEPPKTIEAVLLNHIDEMDSRVNSIREYVAKDPSDGSWT
PYHRLLERHFYKGPGPDTGND
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaaccctttgtatccgaactggtggcgggcaacgccgttgatgcggtgtttctg
ctggccgaacgcaacatggcccacaaaaaagacggcaatccttttcttaccgtcaccctg
gccgaccggaccggccaggtcaagggcgtggtctgggaccaggtggagcggatcgccgcc
gccgtcaccgagggagatttcgtgcatgtccgcgcccaggtgggcgaataccgcggcggc
ctgcagatggtggtcaaggatatgctgcgggtgccggccgatcaggtggacccggccgat
ttcctacccaccaccagccgcgacgtgggaaaaatgttcgaccggctgcgggaaatgacc
ggccgcatgcagaacccgcacctgaaacggctcttcgaggtcttctgggccgacgatgaa
tttgtcgccgcctacacccgcgccccggcggccaaaatgatgcaccatgcctacatcggc
ggccttctggaacataccctctccatggccgtactggccgggatggtggccgggcattac
agcggcgtggatcgggatcttctgctggccggcgtgattcttcacgatgtgggcaaggtc
cgcgaactggaatatgctcgccgcatcgattatacggatgaaggccggctgctcagccat
atcatcatcgggctttccatgctcgacgaaaaactgggccaggtgcccgacttcccgccc
gtccaggcccaactgctcaagcacatgattgtcagtcaccacggcagccgggcgttcgga
tcccccgagccacccaaaaccatcgaagcggtgctgctcaaccatatcgacgagatggac
tcgagggtcaacagcatccgtgaatatgtggccaaggacccttcggacggatcgtggacg
ccctatcaccgcctgctggaacgtcacttttacaaaggtccaggtcctgacacgggaaat
gattga
DBGET
integrated database retrieval system
