Desulfosarcina ovata subsp. sediminis: DSCO28_34250
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Entry
DSCO28_34250 CDS
T06286
Name
(GenBank) hypothetical protein
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
dov
Desulfosarcina ovata subsp. sediminis
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dov03000
]
DSCO28_34250
Transcription factors [BR:
dov03000
]
Prokaryotic type
Helix-turn-helix
Other families
DSCO28_34250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF_3
GAF_2
TPR_12
GAF
AAA_5
AAA_2
HTH_8
AAA
AAA_16
Mg_chelatase
DUF3369
ARM_TT21
TPR_MalT
AAA_7
TPR_8
Motif
Other DBs
NCBI-ProteinID:
BBO82859
UniProt:
A0A5K7ZQR5
LinkDB
All DBs
Position
3878392..3881535
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AA seq
1047 aa
AA seq
DB search
MNRVAEQFPGMDEKNQEIYLLLSLLPPPISLDVLCAITDLAPVRVLQLVEALVKAGYLHR
YLEKGAGYYYLSDPKAAGDFISRVPAKALHNAARRAIAGVCDHLPDDTKRWLSLAYVYQV
SGLPVRHFKELVQAGHYCLGLNLPIDAAAYYRMVLDAMETETLDPVAQETFIDATVGLCT
CRDTALSKDIQRKFLGRSLEFCATVGDPVRKVRLMVLIAKTYIKTARADEANEYLEQAWQ
MLADHDFPADVRVQVALANSEVLFWQGYITKAIERYESAIGNHEELPADVETLKSCIRLG
WIYGIAGETARGVGLIRAVRRKARELCAPDLERYATLILVVVLAEAARIDEGEAFLDEIF
STPTKFLDPYTLWPGNGKRAYFAYCRGEYEKAFEYQKQAYENSKALGTPHHRGPDNLEVM
LALEERGMVHPEWNFKSDVKRLLGWPDIYMKGVAFRFRALKTLKEKGATEAIEADLKESI
ALLTRAGARVELAHAQTLMARIRIGENKIPVAEKLLKSAWEVFSKVNPALFPQDLKPYLD
RTSKNALWVESLLSVGNALGSIRTRNELFNQIIKQAMRIAGAERGAIFLKQDTKLEMVAS
RNIEIPETSSTVGTGQTALIQEVFESGREIVRKAENLRPARVKNLDAMGWTAGFPIRLKS
RVIGVIFMACELARMQLPEDEISLLRIISNQAAVALENMEAYEEIIDLKSDLEAETHFYR
EAFEPGLPGVQMIGRTTPFKKMLGLISRVAASDTTVMITGETGVGKDLVAQAIHQNSSRS
SGPFIAVNVVSLSPELIASELFGHEKGAFTGASRTRKGRFELAGEGTLFLDDIDAFSLDI
QAKMLRVLETRTFERVGGTRTLKTSFRLVAASNRNIEELVEQGLFRSDFYYRLNVFPIKV
PPLRERAEDIPALARYFLKRFAKKFGKTFDKISKNDLDRLIEYHWPGNIRELRHVIERAV
LLSRDGRLVIPPLETCVPACGANTEKILPLREMEARHIMGALSHCRGKVSGKGGAAALLE
VKPTTLYSKMKRLGIERDAYRVKKTGR
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgggttgcggaacagttcccaggcatggatgaaaagaatcaggaaatttatctg
cttctgtcactgctgcccccgccgatttccctggatgtgctgtgcgccattaccgacctg
gccccggtccgggttcttcagcttgtcgaggcgttggttaaagccggttatttgcaccgg
tatttggaaaagggggccgggtactactatctgtccgatcccaaggcggcgggtgacttt
atcagccgggttccggcgaaggcgctgcacaacgccgcccggcgggccatcgccggtgta
tgcgaccacctgcccgatgacaccaaaagatggctgagtctcgcttatgtttaccaggtt
tccggtttgcctgtgcgccatttcaaggaactggtccaggcggggcactactgccttggc
ctgaacctgccgatcgatgccgccgcttattatcgaatggtcctggacgccatggagacg
gaaacgctcgatccggtagcgcaggaaaccttcatcgatgccaccgtcggtctttgtacc
tgccgggacacagcgctgtccaaagatatccagagaaaattcctgggacggtcgcttgaa
ttctgcgccacggtcggtgaccccgtgcgcaaggtcagactgatggtactgatcgccaag
acctacatcaaaaccgccagggccgacgaagccaacgaatatctggagcaggcctggcag
atgctggctgaccacgatttccccgctgacgtccgcgtccaggtggccctggccaactcc
gaagtgcttttctggcagggatacattaccaaggccatcgaacgctacgagtcggcgatc
ggcaatcacgaggaactgcccgccgacgtggagaccctgaaaagctgcatccggctgggc
tggatatacggcatcgccggggagacggccaggggggtgggactgatccgggcggtccgc
aggaaagccagggaactttgcgccccggatctggaacggtatgcgaccctgatccttgtc
gtcgtactggcggaggcggccagaatcgatgagggcgaggcctttctcgatgaaattttc
agcaccccgaccaaatttctggacccctacaccctatggccgggaaatgggaagcgggcg
tattttgcctattgccggggcgaatacgaaaaagccttcgaatatcagaaacaggcctat
gaaaactccaaggccctgggaacgccccatcaccgcgggccggacaatcttgaagtcatg
ctcgctttagaggaacggggcatggttcatcccgaatggaactttaaatcggatgtcaag
cggttgctgggctggccggacatttatatgaagggagtggccttccggttccgggcactc
aagaccctgaaggaaaagggggcgacggaagcgatagaggccgatttgaaggaaagcatt
gcgcttttgacccgggcaggggcaagggtcgaattggcccacgcccagacactgatggcc
cgcatccggatcggtgagaataagatcccggttgcggaaaagctgctgaaatccgcctgg
gaagtcttttcaaaagtcaacccggcccttttcccccaggacctcaagccctatctcgat
cgcacgtcgaaaaacgcgctttgggtggaatcccttttgagtgtcggcaacgccctgggg
tccatccggacccgcaacgaacttttcaaccagatcataaagcaggccatgcgcatcgcc
ggtgcggagcggggcgccattttcctcaagcaggatacgaaactggagatggtcgccagc
cgaaatatcgaaatcccggagacatcctccaccgtggggacaggccagacggctcttatt
caggaagttttcgaatcaggccgcgagatcgtaagaaaggcggaaaacctgagaccggca
agggtgaagaacctcgatgccatgggatggaccgccgggtttcccatccggctcaagtcc
agggtcattggggtgatcttcatggcctgcgaacttgcccggatgcaactgccggaagat
gagatttcccttctccggatcatcagcaaccaggccgccgttgccctggaaaacatggaa
gcctatgaagagatcatcgatctgaaaagcgacctggaggccgagacccatttttaccgg
gaggctttcgaacctggccttcccggggtccagatgatcgggcgaaccacacccttcaag
aagatgctgggattaatcagccgcgtggcggcctccgataccaccgtcatgattaccgga
gaaaccggggtgggcaaggatctggtggcgcaggccatccatcagaacagcagccgctcc
tcgggtcctttcattgccgtaaatgtggtgtcgctcagtccggaactgatcgccagcgaa
cttttcggtcacgaaaaaggcgcgttcaccggcgcgtcccggacccgcaagggccgcttc
gagcttgccggtgagggaacattgtttctcgacgacatcgatgccttttccctggatatc
caggccaaaatgctacgagtgctggagaccaggacgttcgagcgggtgggcgggacccgg
accctgaaaaccagcttccgactggtggcggccagcaaccgcaatatcgaagagctggtc
gagcaggggcttttccgctcggatttctactaccggctcaatgtgtttcccatcaaggtt
ccccccttgcgtgagcgggccgaagacattcccgcactggcccgttatttcctgaagagg
ttcgccaaaaaattcgggaagacgtttgacaagatatccaaaaacgatctggatcggttg
atcgagtaccattggccgggcaatatacgggagctgcgtcatgtgatcgagcgggcggtg
ctgctcagcagggacgggcgcttggtcattccgcccttggagacgtgtgtgccggcgtgc
ggtgccaatacggaaaaaattctgcccctaagggagatggaggcccggcatatcatgggc
gccctttcccactgccggggcaaggtcagcgggaaaggcggcgcagcggcactgctcgag
gtcaagcccaccacgctttattcaaaaatgaagcgcctggggatcgaaagagatgcctac
cgggtaaaaaagacggggcgatag
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