Desulfosarcina ovata subsp. sediminis: DSCO28_39290
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Entry
DSCO28_39290 CDS
T06286
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dov
Desulfosarcina ovata subsp. sediminis
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dov03019
]
DSCO28_39290
Enzymes [BR:
dov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DSCO28_39290
Messenger RNA biogenesis [BR:
dov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DSCO28_39290
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
T2SSE
AAA_23
AAA_30
WHD_HA2
PhoH
ResIII
AAA_16
NACHT
nSTAND_NTPase5
SRP54
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BBO83363
UniProt:
A0A5K7ZT19
LinkDB
All DBs
Position
complement(4473196..4477179)
Genome browser
AA seq
1327 aa
AA seq
DB search
MTDKQPTINGLRRQLGRTMHADRLLLRRQLDRLTRRRKSLGEAAFTRQMADLTTRVEAAV
LRRQYRLERVPRFDDLDHLPITAAKADIVEAIRNHPVVIISGETGSGKTTQIPKFCLAAG
RGVDGKIACTQPRRIAATTVSERIAEELGEALGRSVGYKIRFQDKSDPDAYIKVVTDGIL
LAETQGDSWLNEYDTIIVDEAHERSLNIDFVLGILKRLVQRRRNLKLIITSATIDTEKFS
KAFDDAPVIEVSGRLFPVETRYFFPDAEPEDREDRTTVELAAQAIDELIRRQGRGDILVF
MPTEQDIRETCEVLEGRGYPRTLVLPLFARLSPGEQKRVFASTGFRKIIVATNVAETSIT
IPGIRYVVDTGLARISQYVPRSRTTSLPVAPISRSSADQRKGRCGRVQNGVCIRLFAEED
YLNRPLFTQPEILRANLAEVILRMIALKLGDVADFPFVDRPAEKSIRDGFNLLEELGAIG
RVETRRKGAAPYRLTETGRIMARMPIDPRLSRMLIEAQKEHCLSQMTVIAAALSIQDVRE
RPLDREAQADQAHRRFVDPLSDFITILNIWQALHTGGDAPRSMNALKKFCRQHFLSFRRI
REWRDIHRQITAVLREQGLDPGGNGDVPVAGKDAKGRFHPLYAAIQRSILSGFLSNIAMQ
KEKVFFRAAREREVMIFPGSGLFKNPGSWIVAAEMVETSRLYARTVATIDVAWLEPLGGA
LCRRSTSDPHWSRSRGEVVAREQVTLFGLPIVQDRQVAFGRIDAEKAADIFIRSALIEMD
VKQPLGFMQHNADLVAEVRGMEDRIRRRDILVDDESLVAFYRERLPGVCDIRTLKYRIRK
QGGDGFLRLDREMLTRYRPEETVLAQFPQKLDLGHRVLDCDYVFDPGTDADGITVTIPAE
TTGDVPREQLDWLVPGLLAEKITALIKGLPKAYRVQLVPVAETVETIVDKMPRGRESLTA
ALSRFLFEHLQVDIPASAWPIDQLPEHLRMRLSITDAKGRVVASGRDETLLDQQSADPAL
PPGLQAIKRKWERTGIADWDFGDLPEVLSVEDRQGMPWRIYPRLAVENEAVGIRVFTDSR
AADAAHRDGVAALLARRFADDVKFLKKNLKLPGLLKRQVVYFGGMAAVEAQLVERVSRQL
FAVSPLTAADFDARVAELMTLRVHGCGQDLREAVIAVIEAHHETQCRILEIEQKRIAAPV
VAEFLETLKGEARRLVPDNFVQLYDRQRLLHLVRYLKTIAVRVQRGLTDLAKDRARQDQV
APYTATLNAMLKSMNGSASVDKRVAVEEFFWAIEEYKVSLFAQEVGTDGPISPKRLKKMI
GEIERMV
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaaacaacccaccattaacggccttcggcgccaactcggccgaaccatgcat
gcggaccggctgctgttgcggcgccagttggaccggctgacccgtcgccggaaatcgctg
ggcgaggcggcattcacccgccaaatggccgatctgacgacgcgcgtggaagccgctgtt
ttgcgccgtcaataccgcctggaacgagttccgcgcttcgacgatctcgatcacctgccc
atcaccgcagccaaggccgacatcgtcgaggccatccgcaaccatccggtcgtcatcatc
tccggtgaaaccgggtcgggcaagaccacccagattcccaaattctgcctggccgccgga
cggggtgtcgatggcaaaatcgcctgcacccagccgcggcgcatcgccgccaccaccgtg
tccgagcgcatcgccgaggagctgggcgaggctttgggccgttcggtgggctacaagatc
cgtttccaggacaagagcgatccggacgcctacatcaaggtggtcaccgacggtatcctt
ctggccgagacccagggcgattcctggctcaacgaatacgacaccatcatcgtggacgag
gcccacgagcgcagcctgaacatcgattttgtgctgggcattttgaaacgcctggtccag
aggcgacggaacctcaagctgatcattacctcggccaccatcgataccgagaaattctca
aaggcctttgacgatgcgccggtgatcgaggtctccggacggctttttccggtggagacg
cgctacttttttcccgatgccgagcccgaggaccgggaagatcgcactaccgtggaactg
gcggcccaggccatcgacgagctgatccgccggcagggccggggagatatcctggtcttc
atgcccaccgagcaggatatccgcgagacctgtgaggtcctggagggccgcggctatccg
cgcaccctggtcctgcccctgttcgcccgcttgagtcccggcgagcagaaacgggtcttc
gcgtccacgggttttcgcaagatcatcgtggccaccaacgtggccgagacctccatcacc
attcccggcatccgctatgtggtggatacaggactggcgcgcatctcccagtatgtgccg
cgctcgcgcaccaccagcctgccggtggcgccgatttcgcgcagcagcgccgaccagcgc
aaggggcgctgcggccgggtgcagaacggggtgtgcatccgtctgtttgccgaagaggat
tatctgaaccggcccctgttcacccagccggagatcctgcgcgccaacctggccgaggtg
atactgcgcatgatcgccctaaaactgggcgatgtggccgactttccctttgtcgaccgg
cctgcggaaaagagcattcgcgatggcttcaatttgctggaggagctgggcgccatcggc
cgggtcgagacgcggcgcaagggggcggctccttatcgactgaccgagaccggtcgaatc
atggcccgcatgcccatcgatccgcgcctgtcgcgcatgctcatcgaggcccaaaaagag
cactgcctttcgcagatgacggtcattgccgcggccttgagcattcaggatgtgcgcgaa
cggcccctggacagggaggcccaggccgaccaggcccaccggcgcttcgtggatccgctg
tccgactttatcaccattctcaacatctggcaggcgctgcacaccgggggggatgcgccg
cgtagcatgaacgccttgaaaaaattctgccgccagcattttctctccttccggcgcatc
cgcgagtggcgcgacatccaccgccagatcactgcggtgctgcgcgaacagggactcgat
cccggtgggaatggcgacgtcccggtcgccggcaaggacgccaaggggcgctttcacccg
ctgtatgccgccattcagcgttcgatcctgagcggttttctctccaacatcgccatgcag
aaggagaaggtttttttccgggccgcccgggagcgcgaggtgatgattttccccggatcg
ggcctgttcaagaacccgggcagctggatcgtggccgccgagatggtcgaaacctcgcgg
ctctatgcccgcacggtggccaccatcgatgtggcctggctggagcccctggggggagcg
ctgtgccgccggagcaccagcgatccccactggtcgcgcagccgcggggaggtggtggcc
cgggagcaggtgacccttttcggcctgcccatcgttcaggaccggcaggtggctttcggt
cgcattgatgcggagaaggcggccgatatttttatccgcagcgcattgatcgagatggac
gtcaaacagcccctgggcttcatgcagcacaacgccgatctggtggccgaggtgcgcggc
atggaggatcgcatccggcggcgcgacattctggtggatgacgagagcctggtcgccttt
taccgcgagcgccttcccggtgtgtgcgacatccgtacccttaaatatcgtatccgcaaa
cagggcggcgacggtttcctgcgtctggaccgcgagatgctgacccgctaccggcccgag
gagacggtgctggcgcagtttccccagaagctggacctggggcaccgggtgctcgactgc
gactatgtgttcgatccggggaccgacgccgacgggatcaccgtgaccatccctgccgag
accaccggcgacgtgccccgcgagcagctggactggctggtgccggggctgctggccgag
aagatcaccgccctgatcaaaggcttgcccaaagcctaccgggttcagttggtgccggtg
gccgagaccgtggagacgatcgtggacaaaatgccccgcggccgggagagcctgacggcg
gccttgagccgttttctcttcgagcatctgcaggtggacatcccggcatcggcctggccg
atcgatcaactgcccgagcatctgcggatgcggctttccatcaccgacgccaagggacgg
gtggtggccagtggccgggatgaaaccctgctcgaccagcagtcggcggacccggcattg
cctccgggcctccaggcgattaaaagaaagtgggaacgcaccggcattgccgactgggat
ttcggtgatctgcccgaggtgctcagcgtggaggaccggcagggcatgccgtggcgcatt
tacccccgcctggccgtagagaacgaagcggtcggtatccgtgtttttaccgattcccgg
gcggcggatgcggcccaccgcgatggcgtggccgctcttctggcccgtcgttttgccgac
gacgtcaaatttctgaaaaagaatctcaaactgccgggactgctcaaacgccaggtcgtt
tatttcggcgggatggctgcggttgaggcgcagctggtcgaacgggtttcccgccaattg
tttgccgtcagtccgctcacggcggctgatttcgatgcccgagtggccgagttgatgacc
ctgcgggtgcatgggtgcggacaggacctgcgggaggcggtgatcgccgtgatcgaagcc
caccacgagacccaatgccgcattctggagatcgagcagaaacgcattgccgcgccggtg
gtggccgagtttctggagacactcaagggcgaggcgcgccggctggtgcccgacaacttc
gtgcagctctacgaccggcagcggctgctgcatctggtgcgttatctgaaaacgattgcg
gtccgggtccagcgcggactgaccgatctggccaaggatcgtgcccgccaggaccaggtc
gccccctataccgctactctgaacgcgatgctcaaatccatgaacggctcggcctcggtc
gacaaacgggttgccgtggaggaatttttctgggccatcgaggagtacaaggtctccctt
ttcgcccaggaggtgggcaccgacgggcccatatcgcccaagcggttgaaaaagatgatc
ggcgagatcgaacgcatggtgtag
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