Desulfosarcina ovata subsp. sediminis: DSCO28_42710
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Entry
DSCO28_42710 CDS
T06286
Symbol
mutM
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dov
Desulfosarcina ovata subsp. sediminis
Pathway
dov03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DSCO28_42710 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dov03400
]
DSCO28_42710 (mutM)
Enzymes [BR:
dov01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DSCO28_42710 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DSCO28_42710 (mutM)
DNA repair and recombination proteins [BR:
dov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DSCO28_42710 (mutM)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_SprT
DUF7573
Motif
Other DBs
NCBI-ProteinID:
BBO83705
UniProt:
A0A5K7ZU04
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All DBs
Position
4861345..4862214
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AA seq
289 aa
AA seq
DB search
MPELPEVQTVVDQLNQQAIVGRTITAARVYWPKTIASPDPEQFCETIIGLTVRKLARRGK
FIVCQLSKGQTLLIHLRMSGRLNWTAKGNARNKHEHVILEIDRTHELRFQDTRKFGRLFL
TQAPQTILGRLGPEPLDKTFTGRRFLSMLQRTRRQIKPLLLDQHFLAGLGNIYVDEALWA
ARIHPLRISSTLAEAEVFALHRAIRQVLRKGIMNMGTSLGNGQGNFYSANNRPGKNADQL
KVFRRTGKPCLRCGTTIIRRIVAQRSSHICTKCQQPPCDGKTFKKRTTA
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgcccgaagtccaaaccgttgtcgaccaactcaaccagcaggccatcgtt
ggccgcaccatcaccgccgcccgcgtttactggcccaaaaccattgcctcgccggacccg
gagcagttctgcgaaaccatcatcgggctgaccgtccgaaagcttgcccgacggggcaaa
ttcattgtctgccaactatccaaagggcagaccctgctgattcacctgcgcatgagcggg
cggttgaactggacggcaaagggaaacgcacgcaacaaacatgaacatgtgattctggaa
atcgatcggacacacgaattgcgctttcaggacacgcgcaagttcggccgcctgttcctg
acccaggcgccccagaccattcttggccgcctgggacccgaaccgttggacaaaacgttc
accggcaggcgctttctgtccatgctgcaacgcacccgccggcaaatcaagccgcttttg
ctggatcagcattttctggccggcctgggcaacatttatgtggacgaggcgctctgggcc
gcccgcatccaccccttgcgaatcagcagcacccttgctgaggcagaggtctttgccctg
caccgggccattcgacaggtgctaagaaagggcatcatgaacatgggcacgtcactggga
aacggtcagggcaatttttactcggcaaacaatcgcccgggaaaaaatgcggatcagttg
aaggtgtttcgtcgcaccggcaaaccctgcctgcgctgcggaaccacaatcatccgccgg
attgtggcccagcgcagcagtcacatctgcaccaaatgccagcagccgccatgcgacggg
aaaacgttcaagaaacgaacaacggcatga
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