Desulfosarcina ovata subsp. sediminis: DSCO28_49890
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Entry
DSCO28_49890 CDS
T06286
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
dov
Desulfosarcina ovata subsp. sediminis
Pathway
dov00260
Glycine, serine and threonine metabolism
dov00460
Cyanoamino acid metabolism
dov00630
Glyoxylate and dicarboxylate metabolism
dov00670
One carbon pool by folate
dov00680
Methane metabolism
dov01100
Metabolic pathways
dov01110
Biosynthesis of secondary metabolites
dov01120
Microbial metabolism in diverse environments
dov01200
Carbon metabolism
dov01230
Biosynthesis of amino acids
dov01240
Biosynthesis of cofactors
dov04981
Folate transport and metabolism
Module
dov_M00140
C1-unit interconversion, prokaryotes
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
DSCO28_49890 (glyA)
09102 Energy metabolism
00680 Methane metabolism
DSCO28_49890 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
DSCO28_49890 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
DSCO28_49890 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
DSCO28_49890 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
DSCO28_49890 (glyA)
Enzymes [BR:
dov01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
DSCO28_49890 (glyA)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Cys_Met_Meta_PP
Aminotran_5
OKR_DC_1
Motif
Other DBs
NCBI-ProteinID:
BBO84423
UniProt:
A0A5K7ZVZ6
LinkDB
All DBs
Position
complement(5666382..5667629)
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AA seq
415 aa
AA seq
DB search
MNTDLIRQTDPEIARVIDDEAQRQQSHLELIASENIASRAVMAAQGSILTNKYAEGYPEK
RYYGGCEFVDRAEQLAIDRVLSLFGADTANVQPHSGSQANMAAYFALLEPGDTILGMDLA
HGGHLTHGAKVSFSGRLFNFVHYGVSRETETIDYDQVAEKANQYHPKMIVAGASAYPRFF
DFKALADIARSVDALLMVDMAHIAGLVAAGVHPSPVPYSDVVTSTTHKTLRGPRGGLILA
REAYGKKINSQIFPGIQGGPLMHIIAAKAVAFKEAQGSAFKEYQKTIVTNAATLADTLKE
KGLDLVSGGTDNHLMLINLTRLDITGRDAENALGRAGITVNKNAIPFDSRSPYLTSGIRV
GTPYVTSRGMQAAEMQIIGGLIADVLRNPEDGNRIEKTRAQVQSLCDAFPLYPDS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
ttgaataccgacctgattcgacagaccgatcccgaaattgcccgggtgatcgacgatgaa
gcgcagcggcaacaatcccacctggaactgatcgcatcggaaaatatcgccagccgggcc
gtcatggccgcccagggcagcatcctgaccaacaagtacgccgaaggctatccggaaaag
cgctattacgggggatgcgaattcgtcgaccgcgccgagcagttggccattgaccgggtc
ctctccctgttcggtgccgacacggccaatgtgcaaccccattcgggctcccaggccaac
atggccgcctattttgctctgctcgaaccgggtgacaccatcctgggcatggatctggcc
cacggcggccatctgacccacggtgccaaggtcagtttttccggccggcttttcaatttc
gtgcactacggcgtcagccgggagaccgaaaccattgattacgaccaggttgcagagaag
gccaaccaataccaccccaaaatgatcgtggccggggccagcgcctatccccggttcttt
gacttcaaagccctggcggacatcgcccggtcggtcgatgccctgctgatggtggacatg
gcccatatcgccggactggttgccgccggcgtgcacccttcgccggtcccttacagcgat
gtggtcacatcaaccacccacaaaaccctgcgcggtccccggggcggattgatcctggcc
cgcgaagcctacggcaaaaaaatcaacagccagatcttccccggcatccagggcggcccc
ctgatgcacatcatcgccgccaaagccgtggcgttcaaggaagcccagggcagcgcgttc
aaggaataccagaaaaccatcgtgaccaatgcggccaccttggccgatacgctgaaggaa
aagggcctggacctggtttccggcggtaccgacaaccacctgatgctgatcaacctgacc
cgtctggacatcaccgggcgggacgcggaaaacgccctgggtcgtgccggtatcacggtc
aacaagaacgccatcccttttgactcacgcagcccctatctgaccagcggcattcgcgtc
gggaccccttacgttaccagccgcgggatgcaggcggcggaaatgcaaatcatcggtggt
ttaatcgccgacgttctgcgcaatccggaagatggcaaccggattgaaaagacacgtgct
caggttcagtcgttgtgtgacgcgttcccgctctacccggattcgtaa
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