Desulfosarcina ovata subsp. sediminis: DSCO28_53150
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Entry
DSCO28_53150 CDS
T06286
Name
(GenBank) ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dov
Desulfosarcina ovata subsp. sediminis
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dov03016
]
DSCO28_53150
Enzymes [BR:
dov01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DSCO28_53150
Transfer RNA biogenesis [BR:
dov03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DSCO28_53150
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
BBO84749
UniProt:
A0A5K7ZWW5
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Position
complement(6026214..6028199)
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AA seq
661 aa
AA seq
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MESGEIVEYIDDQKIICAVVMEGGNQRLQLLTENNREVKIAFQRLCHRSKMRLDLSLGRN
RLVEHLRAIAEKRIALADQIDIAELWDVLSPEPGWIDLNTMTGLCFPTDTDDDHESGVIR
AMFKSRHHFKFKPDRFRPYTEEELAVIIALEEKAARQQRLIASGAAWINAVRSGSMDSRP
ERHQELSEIFKSYFLFEKDSPHCETARAIMKNAELKAIDGLFNHLVAVGEWCVDENVDLL
RYHIPTDFSAGALDLAQSISTLSDDTLRKTGRVDLTHLPTLTIDGQSTLDFDDALSIEIR
NDHLLVGIHISDVAQFIKKGDRLDQEALSRGSSIYLPDNRISMAPPVLAENRLSLKKGHI
RPAISTMVKVSRTGDIISYDIFPSIIRVDHQLSYFEANMSADTSDAIERLHDIAIRFREK
RLSQGAIQIILPEINVWLDETGVPMVNRVNRESPGRMLIAEMMILSNWLSAKFLAENDIP
AIFRSQPKPKSRILKNGTGTLFQNWMQRKQLNRFVLSSTPDHHCGLGLDAYVTASSPIRK
YFDLVTQRQLRAGLGLEAPYSKTEIEAIIEQLARPMADVGRIQFRRNRYWLLKYLEGRIG
EKEEAIVLQRRRNAYAVLLKSYMIECNLPQSSGIDLKPEDLVQVTIQHVNARNNILSVFM
G
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaggtgaaattgtagaatatattgatgaccaaaaaatcatttgcgccgttgtg
atggaaggtggcaaccagcggttgcaactgctaacggaaaacaatcgggaagtaaaaatc
gcgtttcaacggctgtgtcatcgatccaaaatgcgtctggacctgtcattgggccgcaac
cgactggtggaacatctgagggcaattgccgaaaaacgaatcgccctcgccgaccagatc
gatattgccgaactttgggatgtgctgagcccggagccaggttggatcgacctgaatacc
atgaccggcctctgctttccgaccgatacggatgatgaccatgaatccggtgtcatccgg
gcaatgtttaaaagccgtcatcattttaaattcaagccggatcgcttccgaccctatacc
gaagaagagctggccgtcatcattgcccttgaagagaaggcggcgcgccagcagcggctc
atcgcgtccggcgccgcctggatcaacgctgttcgctcaggctcgatggattcccggccg
gagcggcaccaggagctttcggaaatatttaaatcctattttctgtttgagaaagacagc
ccccattgtgaaacggccagggcgatcatgaaaaacgccgaactgaaggccattgacgga
cttttcaaccatctggtggccgtgggagaatggtgtgtggatgagaacgtggatcttttg
cgttaccacattcccaccgatttttcagcgggcgcccttgacctggcccaatccatatca
acgctatccgacgacaccctgaggaaaaccggacgggtggatctgacccacctgccgacc
ctcacgattgacggccagtcaaccctagactttgacgatgccctgagcatagaaatccga
aatgaccatcttctcgtgggcatccacatctccgatgtggcccagttcatcaaaaagggc
gatcgtttggatcaggaagccctctcccgcggcagttccatctatctgcccgacaaccgg
atcagcatggcaccacccgtgctcgcggaaaaccggctgagcctgaaaaaggggcatatc
cggccagccatcagcaccatggtgaaggtcagccgtaccggcgacatcatcagttacgac
atattcccttccatcattcgcgtcgatcaccaactcagctattttgaagccaacatgagc
gccgacaccagcgacgccatcgaacggctccacgatatcgctatccggttcagggaaaag
cggttgagccagggcgccatccagatcatccttccggagatcaacgtctggctggatgaa
accggcgttcccatggtcaatcgggtaaaccgggaaagtcccggacggatgctgatcgcc
gaaatgatgattctgtccaactggctgtcggcaaaattcctggcagaaaatgatatcccg
gcaattttcagatcccaaccgaaacccaaaagccgaattctcaaaaacggcaccggcacc
ctgtttcagaactggatgcaacgcaaacaactcaaccgttttgtcctcagctcaacgccc
gaccatcattgcggactgggcctggacgcctatgtgaccgccagttcccccatccgcaaa
tactttgatctggtcacccaacgccagttacgggcgggcctggggctcgaagccccctat
tccaaaactgaaatcgaagcgattatcgagcaactggcccgccccatggcggatgtgggc
cggattcaattccgcagaaaccgctactggctgctcaagtaccttgagggacgcatcggc
gaaaaggaagaagccattgttttgcagcggcggcgcaacgcatacgccgttttgctgaaa
agctacatgatcgagtgcaacctgccccaatccagcggtatcgatttgaaacccgaggac
ctggtccaggtcaccatccagcatgtcaatgcccgcaataatattctttccgtattcatg
gggtag
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