Desulfosarcina ovata subsp. sediminis: DSCO28_59810
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Entry
DSCO28_59810 CDS
T06286
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
dov
Desulfosarcina ovata subsp. sediminis
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dov03021
]
DSCO28_59810 (rapA)
Transcription machinery [BR:
dov03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
DSCO28_59810 (rapA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
Tudor_RapA
ResIII
DEAD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BBO85415
UniProt:
A0A5K7ZYR6
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Position
6829828..6832647
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AA seq
939 aa
AA seq
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MFDFVPGQRWSSEMEPELGIGIVDAVDGRRVHLRFPDSGLLRIYAAHSAPLQRAVFHPGD
RVTGENGVALTVTRVETVDGLTVYHGDGMRLAEDRLVGTPALDTPKARLLAGQRDLSSHF
DLRRRILDYRCRMTGAAAQGFIGGRVELIPHQFAIAAEVSSRRFPRVLLADETGLGKTIE
AGLVLHRLVFTGRIHRALVIVPDALVVQWFVELARRFNLQFRIFDEETISVRPAPTPPMV
DNPFAEEPLGLCGFSFVRQATPTVQERLLEGEWDMVVVDEAHHMQPGDPLFRRIQRLGRR
APRMILITATPGHLAARGHFARLRLLDPHRYGDYERFKTESATFGELARMAQMLDDRSEI
DPAARARLGRLLDMPPARLQVELNRAAGRQKLMHLLIDRHGTGRVMFKTTRRTVTGFPGR
RAHLIPLDPDAADGADRRRISRECLDDGRDDKAGHPVDFTADPRVAWLDGYLRTHRDVKI
LLICRTAQKVNALYDALDRRINASIGRYHEQMTLVQRDRNAAWFADPQGATLLLCSEIGS
EGRNFQSARHLVLFDLPWDAELLEQRIGRLDRIGQTGVVQVMVPYVRGTGGEVLARWYHE
AMGAFEATVPASGWVMQRMRKVLMALIDNPAGPVDPVRLNRIIRSSRVAVSRQQRRIDTG
RDCLLELDALPPDRVAELLDRIRAVDGDPCFQELIEPLLDIWGITMEPLADGAFRLTPDH
RYANPLPGFRPSGMNVTLDRSLALAREDLGFLTWDHPLVTGAMDQYLGSGKGSTAFSHVP
GNGVPEIFLEMLFVIESTAATDPFVSAFLPPAPIRVVVDHLLKDGSAALPDSTGMAEASA
KHFARLLPVVSRLIPDMVAAGQRIAEETARPVIAAARQNAHQTMDDTVSRLQTLSRVNSA
IGPAEIDGAIGERDAVLAAVDAATVRLDALRLVTRGDFP
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgttcgattttgtaccggggcagcgctggagcagtgaaatggaaccggaactgggtatc
ggtattgtcgatgccgtggatggccggcgggtgcatctgcgttttccggacagcggcctg
ttgcgaatctatgcggcccacagcgcgcccctgcagcgcgcggtcttccatcccggtgac
cgggtgaccggtgagaacggggtggccttgaccgtcacccgggtcgagaccgtggacggg
ctgaccgtttatcatggtgacgggatgcgactggccgaggatcgcttggtcggcaccccg
gccctggatacgcccaaggcacgcctccttgccggccagcgggatctttccagccatttt
gacctgcgccgccgtatcctggattaccgctgccggatgaccggggcggccgcacagggg
ttcatcggggggcgggtggaattgattccccaccagttcgccattgccgccgaagtgagc
agccgtcgttttccacgggtgctgctggccgatgaaaccggactgggcaagaccatcgaa
gcgggactggtcctgcatcgcctcgtcttcaccgggcggattcaccgggccctggtcatc
gttcccgatgccctggtggtgcagtggttcgttgaactggcccgtcgcttcaacctgcag
ttccgcattttcgacgaagagaccatttctgtccggccggccccgactccgcccatggtg
gacaacccttttgccgaggaaccgttgggattgtgcggtttctcatttgtgcgccaggcg
acccccaccgtgcaggaacgccttctcgagggggagtgggatatggtggtggtcgacgaa
gcccaccacatgcagcccggcgatccgctttttagaaggatccagcgcctgggccggcgg
gcgccgcgcatgattctgattaccgccaccccgggacacctggccgcgcgcggccacttt
gcccgcctgcgtcttctggatccccaccggtatggcgattatgaacggttcaagacggag
agcgccactttcggggaactcgcccggatggcccagatgttggatgaccgcagtgaaatc
gacccggcggcacgggcacggctgggacgactgcttgacatgccgccggcgcgcctgcag
gtggaactgaaccgggcggcgggccggcaaaagctgatgcacctgctgatcgaccggcac
ggtaccggccgggtgatgttcaagaccacccggcgtacggtgaccggttttcccggtcgg
cgggcacatctgatcccgttggatccagatgctgccgatggcgcggaccgtcgccggatc
agccgtgaatgcctggacgacggccgggacgacaaggcgggccacccggtcgattttacc
gccgacccccgtgtcgcttggctggacggttacctgcgcacccaccgggacgtcaagatt
ttgctcatctgccgcacggcacaaaaggtcaacgccttgtacgatgcgctggaccggcgc
atcaacgcctccatcggccgctaccacgaacagatgaccctggtgcagcgcgaccgcaac
gccgcctggtttgccgacccccagggggccacgctgctgctctgttcggagatcggcagc
gagggacgcaatttccagtctgcccgccacctggttttgtttgaccttccctgggatgct
gagcttctggagcagcgcatcggccggctggaccgcatcggccagaccggggtggttcag
gtgatggtgccttacgtccgcggcaccggcggtgaggtgctggcccgctggtaccatgag
gccatgggcgcttttgaggccaccgtaccggcatccggatgggtcatgcagcgcatgcga
aaggtactcatggccctgattgacaatcctgccggtccggtcgatccggtccggctgaac
cggatcatccgcagtagccgggtggccgtgtcccgccagcagcggcgtatcgacaccggg
cgtgattgcctgctggagctcgatgccctgccaccggatcgggttgccgaattgctggac
cgcatccgtgcggtcgacggcgatccgtgctttcaggaattgatcgaaccacttttggac
atctggggaattaccatggaacctttggctgatggtgctttccggctcactccggaccat
cgctatgccaatccgctgccgggattccggccgtcgggcatgaacgtgaccctggatcgc
tccctggcgctggcccgtgaggatctgggttttctcacatgggaccatccgttggtgacc
ggggccatggaccagtacctgggcagcggcaagggcagtacggccttcagccatgttccc
ggcaacggggtcccggaaatcttcctggagatgcttttcgttatcgaatccactgccgcg
accgacccttttgtaagcgcctttttgccgccggcccccatccgggtggtggtggatcat
ctcctcaaggacggctcggccgcgctgcctgattcaacggggatggcggaagcttcggca
aagcattttgcccggctgctgccggttgtttcgcgcctgatccccgatatggtggccgcg
ggccagcgcattgccgaggagacggccaggccggtcatcgcggccgcccggcagaacgcc
catcagaccatggacgatacggtcagccgcctgcagacgctcagccgcgtcaattctgcc
atcggcccggcggagatcgatggggccattggcgagcgggatgccgtgctggcagccgtg
gacgcggcaactgttcgcctggacgcccttcgcctggtgacccggggcgatttcccctga
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