Desulfosarcina ovata subsp. sediminis: DSCO28_60370
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Entry
DSCO28_60370 CDS
T06286
Symbol
nifA
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02584
Nif-specific regulatory protein
Organism
dov
Desulfosarcina ovata subsp. sediminis
Pathway
dov02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DSCO28_60370 (nifA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dov03000
]
DSCO28_60370 (nifA)
Transcription factors [BR:
dov03000
]
Prokaryotic type
Helix-turn-helix
Other families
DSCO28_60370 (nifA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
AAA_5
GAF_2
AAA_2
HTH_8
Mg_chelatase
AAA
GAF_3
AAA_16
NUDE_C
bpMoxR
AAA_3
AAA_7
Ribosomal_L16
nSTAND3
RsgA_GTPase
DUF3801
Motif
Other DBs
NCBI-ProteinID:
BBO85471
UniProt:
A0A5K7ZZA5
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All DBs
Position
6898264..6899787
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AA seq
507 aa
AA seq
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MKAIEQVTLLYEISNALNEHLDLKKSMYKVLDILSTALQMERGTISILNPLRNEISIEVA
HSLSKSAMERVKYKLGEGIIGRVIETGEAVAIPKISQEPLFLNRTASRKIKGMGEISFIC
VPVQKGTHVVGALSVDRTFDPDYSLEDGTKLLSVVATMLARHAINLETIQLEKEALRDEN
KRLRDELENKYRINNIIGNSNKMREVFQMISQVSRSNATVLIRGESGTGKELVANSIHYS
STRSKGPFVKVNCAAIPNNLIESELFGHEKGAFTGAVKQKPGRFELAHKGTIFLDEIGSI
EPDVQVRLLRVLQEREFERVGGHKTIKVDVRIIAATNKNLEQAVDEDSFRGDLYYRLNVF
PIYMPPLRERKTDILLLADFFLERYAEENGREVKRLSTPAIDMLMAYHWPGNVRELENCV
ERAVLLCEEGAIHSYHLPPSLQTGKESGTLPDLSLEDAVAALEKEMIIDALKNTRGNITL
SAEVLKTTVRKFAYKAKKFGVDYRTYR
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccattgaacaggttaccctgctttacgagatttccaatgctctgaacgaacat
ctggacctgaaaaaatcgatgtacaaggtgctggacattctctccacagccttgcagatg
gagcgtggcaccatctctatcctcaatccgctgagaaacgaaatcagtatcgaggtggcc
cacagtctctccaaaagtgccatggagcgggtcaagtacaaactgggtgagggaattatc
ggccgggtcatcgaaaccggcgaggcggttgcgattcccaagatcagtcaggaaccgctg
tttctcaaccggacggcgtcacgtaaaatcaagggcatgggagagatctcctttatctgc
gtaccggttcaaaaaggcacccacgtggtgggtgccttgagcgtggaccgtacttttgat
ccggactattccctggaagacggcaccaagctgctgtcggtcgtggccaccatgctggcc
cgccatgccatcaatctggagaccatccaactggagaaggaggccctgcgggacgagaac
aaacggctgcgtgacgagttggaaaacaagtaccgcatcaacaacatcatcggtaacagc
aacaagatgcgggaggtgttccagatgatcagccaggtgtcgcgcagcaatgccaccgtg
ttgatccgtggagagagcggcaccggaaaggaactggtggccaactcgattcattacagc
tccacccgctccaaggggccgtttgttaaggtcaactgtgcggcgatccccaataatctg
atcgagagcgagctgttcggccatgaaaagggggcctttaccggagcggtcaaacagaag
ccggggcgttttgaactggcccataagggcaccattttcctggatgagatcggcagtatc
gaacccgacgtgcaggtgcgcctgcttcgggttctgcaggagcgggagttcgaacgggtc
ggtggacacaagaccataaaggtggacgtgcgcattattgcggcgaccaacaagaacctg
gaacaggcggttgatgaggactcttttcgcggcgatctgtattaccgcttgaacgtgttt
cccatttatatgccgcccttaagggagcgcaagaccgacatcctgctgctggcggatttt
ttcctggaacgctacgccgaggagaacgggcgcgaggtcaaacggctttccaccccggcc
atcgacatgctgatggcctatcactggcccggcaatgtgcgcgagctggaaaattgtgtc
gaacgggctgtgctgctttgtgaggaaggcgccatccacagttatcacctgccgccttcc
ctgcagacgggcaaggagagcgggacgttgccggacctctccctggaagacgccgtggct
gccctggagaaagagatgatcatcgatgccctgaaaaatacccgtggcaatatcacccta
tccgccgaagtgttgaaaacgacggtgcgcaagttcgcctacaaggcaaaaaagttcggc
gtggattatcggacctatagataa
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