Desulfosarcina ovata subsp. sediminis: DSCO28_61850
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Entry
DSCO28_61850 CDS
T06286
Name
(GenBank) hypothetical protein
KO
K20276
large repetitive protein
Organism
dov
Desulfosarcina ovata subsp. sediminis
Pathway
dov02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
DSCO28_61850
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SdrD_B
Beta_helix
NosD
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-ProteinID:
BBO85619
UniProt:
A0A5K7ZZB4
LinkDB
All DBs
Position
7063708..7068984
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AA seq
1758 aa
AA seq
DB search
MGDINKQLPGLRARLNRYGLLALVLCIGLITGTNAGAANLPGLTVIGVAQDGSETLLADS
EYRWLVEQDLTYHVNFDDNGNPISDPNTPGFDPNWDNTLSVSFYRTHMPVVAKGCVGFAD
VGCNELPIPVAGLDPNQHYFVSVLPRSGYTIGGIGFKGGEAPTVYVHQTPLPTAQISVFV
FPDTHPVNGAPDTPEEDPATNNVDMSGFQIIVEDGGGRYGAAAGTQSTDVYGNPLGTTYQ
KNPDGTYVLDPNGNLIIDVMGQGIVTGPDGWAHIYNLAQGKYGIQAVPPDGSGWVQTSTI
EGTKIIDAWVKPNEPEFFAEFGPPGPHVFIGFVKEDTETPGGTPVTGQIVNLHMSRPPDY
AFYNGAPFGHTTPWVGVNDGTGELIYAAPTDDGNFNIPGLPDGNYELVVWDSALDLIISA
TAINITGGQCDTPSGSCNLGEVPVFQWFHRQEHYVFNDDGGIFGPDSPQAANGIWDEGEG
PLPDVPLNLRWRDGSIYQTNVTDFEGAYAFDQVFPFFSWLVAETGFTRLQATGVTVTVDN
GGPIDPDNLWSFGGQLNPQDQTNPATGPGTETADYRVETGPVLTQAFQGFIGQTNAFQWG
KRHYPDGENGGITGIVFYDVTRDVNNPQLSAGQVWEPGIPGVTVNLYDATGTTLLNTTVT
DSWDASIPTDCKYENSETGPFTFSPDGIHFYDRDCYDGLRNFNQVRPGVFDGGYAFSDYY
PGGITVAADGTIIPNVGGETPVTLVPADYVVEVIPPPGYELTKWEDKNVDFGDAYQPPTP
ALLPPECVGTDTPVPQYLTLYPDENIEVVGWTPGMSASLCDKKLVNLSAGANAAADFFLF
TEVPIAAHGVGFILDDTQNEFDPNAPNFGEKYAPPFMPVSIKDWTGREIGRTYSDQYGLY
NFLVPSTATTNVPAPSGMSPNMLTACMNDATLPDGSLDPQHNPIYSQFCYTLQYMPGVYT
YLDTPVIPVGAFAGPDRNPVDCEFPEATPRIASVSVETNLVGGGPYVPTVTVTNGPPANR
GVFPDGDQTITINAMGTVMVPNPDYCNPLGGTCPAGANTTDKLIARDAGFGDTPGSLDLG
GVPLAINSWTDAQITATVSANTNIGTVGGRQLTVTRADGGETVTGITVQFGLRGSGSNVG
HVVQVYPNPGGNPLASSLQDAIDAAAPNDLLLVNPGIYNEMVIMWKPVQLQGWGEGTTTI
NALKQPAEKLVAWRALAEQLVTNGDVTLLPGQEVGFGGIEPVTLFNEEGAGILVLASEGG
QRRFGLARNRDARIDGFTITGADTGGGIIANGYADYLEISNNRVTSNSGTFGGGIRVGHP
LLVNAAQDGYEDGMNDYVRIHNNQVNQNGALDGAGAGISMGAGSDSYQVTDNWVCGNFST
GEGGGIGHIGLSSEAANNDPVPLIARNQVLFNEIFNQGPGNFSGGGIFIGGAPPLLAGTL
SPGAGNVRVEDNLIEGNGAGAGDGAGVRLAVVNGQDVADNNNSNAWYGVDLFNNIIVNNV
AGLAGGGISLQDAVKVRLFHNTIANNDSLGTAGEAFLDPNQSTPQDGAGIVAWAHSPQLL
ATGAAIGAFSDPELEDSIVWHNRQFYFKIAAGNPVDPAGGSVWGLCPDIGGTIAGLGCAS
NDPVYNDLGVIGAAGSLNPLTSILTDATGYDVSNIAADPAFLRPYINGARSDVFQPEITT
AIQANPAFDEGGNFIRPNYGPLTLVADPGVSPNLLWDYHIQSASPAVDAGSIATPPADFD
GDSRTASPDIGADEYQTP
NT seq
5277 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatatcaacaagcaactacctggtttgcgggcaaggctcaaccgttacggcctg
ctcgcactcgttttgtgtatcggcctgataaccggtaccaacgccggcgcggcgaatctt
ccgggcctgaccgttattggcgttgcccaagacggtagcgaaaccctacttgccgattcg
gaataccgatggttggtggagcaggacctcacctaccacgtcaatttcgatgacaacggg
aacccgatcagcgatcccaatactcccggcttcgatcccaactgggacaataccttgtcg
gtcagtttctaccggacccacatgccggtggtggccaaggggtgtgtcgggttcgccgat
gtcggctgcaatgagcttccgattccggtcgccggacttgatcccaatcagcactacttc
gtttccgtgctgccacggtcgggctacaccatcggcggtatcggctttaagggcggcgaa
gcgcccacggtctatgttcaccagaccccgctgcccacggcccagatctcggtctttgtc
tttcccgacacccatccggtcaacggcgccccggacaccccggaggaggatccggccacc
aacaatgtcgacatgagcggtttccagatcatcgtcgaggacggtggcgggcgctacggc
gcggccgccggcacccagtctaccgacgtctacggcaatccgctgggaacgacctaccag
aaaaatcccgacggcacgtacgtccttgaccccaatgggaacttgattattgatgtgatg
ggccagggcatcgtcaccggtccggacggctgggcgcacatctacaacctggcccagggc
aagtacggcatccaggccgtgccgccggacggttccggctgggttcagacctcgaccatt
gagggcacaaagatcatcgatgcctgggtcaagcccaacgagcccgagttttttgccgag
ttcggcccgccggggccgcatgtcttcatcggtttcgtcaaggaggacacggagaccccg
ggcggcacgccggtcaccggccagatcgtgaacctgcacatgtcgcggccgccggattac
gccttttacaacggtgccccattcggccacaccacgccgtgggtgggtgtcaatgacggc
accggcgagctgatctatgcggcccccaccgacgacgggaacttcaacataccgggcctg
cccgacggcaactacgagctggtggtttgggattcggccctcgacctgatcatctctgcg
acggcgatcaacatcaccggcggccaatgcgacaccccgagcggatcgtgcaatctgggt
gaagtgccggtcttccagtggttccaccgtcaggagcattacgtcttcaacgacgatggc
gggattttcggccccgactctccacaggccgccaacggcatctgggacgaaggcgaggga
cccttgcccgacgtgccgctcaacctgcgctggcgcgacggttccatctaccagaccaat
gtgaccgacttcgagggcgcttatgcctttgaccaggtgttccccttcttctcctggctg
gtggccgagaccggcttcactcggctgcaggcgaccggcgtgacggtcaccgtggacaac
ggcggtccgatcgatccggataatctctggtccttcggcggacagctcaatccgcaggac
cagaccaatccggctaccggaccgggaaccgaaaccgccgactaccgcgtcgagaccggg
ccggtgctgacccaggccttccagggattcatcggccagaccaacgctttccagtggggc
aagcgccactacccggacggcgagaacggcggcatcaccggcatcgtgttctacgacgtg
acccgggacgtcaacaacccccaactgtccgccggccaggtctgggagccgggcattccg
ggcgtgaccgtcaacctttatgacgcgaccggaacgaccctgctcaataccaccgtcacc
gacagttgggacgcatccattcccaccgactgcaaatatgaaaatagtgagaccggcccg
ttcaccttttcccccgacgggatccatttttatgaccgtgactgctatgacggcctgcgc
aacttcaaccaggtgcgtcccggtgtgttcgatggcggctatgccttcagtgattactat
cccggtggcatcaccgttgccgcggatggaaccattatccccaatgtgggcggagagaca
ccggttaccctggttcccgccgactacgtggtcgaggtgatccctccgccggggtacgag
ctgaccaagtgggaagacaagaatgtggatttcggtgacgcctaccagccgccgacaccg
gccctgctgccgccggagtgtgtgggaacggacacaccggttccgcagtatctgaccctc
tacccggatgagaacatcgaggtggtgggctggacaccggggatgagcgcctcgctgtgt
gacaaaaaattggtcaacctttctgccggggccaacgcggctgcggatttcttcctcttc
accgaggtgcccatcgcggcccacggtgtcgggttcatcctcgacgacacccagaacgag
tttgaccccaacgcgcccaacttcggcgagaagtacgcaccgccgttcatgccggtctcg
atcaaagactggaccggccgtgagatcgggcgcacctattccgaccagtatggtctgtac
aacttcctggtgccgtcgaccgccacgaccaacgtgccggcgcccagtggaatgtcgccc
aacatgctgaccgcctgcatgaacgacgccactctgcccgacggttcgctggacccgcag
cacaaccccatttacagtcagttttgctacaccctgcagtacatgccgggtgtctacacc
tacctcgataccccggtgattccggtgggcgcattcgccggcccggaccgtaacccggtg
gactgcgagttccccgaagcgacaccgcggatcgccagtgtcagcgtggaaaccaacctc
gttggcggcggtccctatgtcccgacagtcaccgtgaccaatggtcctccggcgaatcgg
ggtgtgttccccgacggggatcaaaccatcacgattaatgccatggggacggtaatggta
ccgaacccggactattgtaatccgcttggcggtacctgcccggcgggcgccaacactacc
gacaagctaatcgcacgcgacgccggctttggcgacacgccaggcagccttgatcttggt
ggggtgccactggcgatcaactcgtggaccgacgcccagatcaccgccacggtgtcggcc
aacaccaacatcggcactgtcggcgggcgccagctcaccgtgacccgtgccgacggcggc
gagacggtcaccggcatcaccgtccagtttggtctgcgcggcagcggatccaacgtgggc
catgtcgtgcaggtctaccccaatccgggcggcaatccgctcgcctcgtcgctccaggac
gccatcgatgcggctgcaccgaacgacctcttactggtcaaccccggcatttacaacgaa
atggtgatcatgtggaaaccggtccagctccagggctggggcgagggcacgacgacgatc
aatgccctgaagcagccggccgagaagctggttgcctggcgggcgctggccgaacaactg
gtcaccaatggcgatgtcacgcttttgcccggtcaggaagtgggcttcggcggcatcgag
ccggtgaccctcttcaacgaggagggggccgggatcctggtgctggccagtgagggcggt
caacgccgcttcggcctggcccgtaaccgggacgccagaatcgacggtttcaccatcacc
ggcgccgacaccggcggcggtatcatcgccaacggctatgccgattaccttgagatttcc
aacaaccgcgtcaccagcaacagcggcacgttcggcggcggtatccgcgtcggtcatccc
ctgctggtcaacgctgcccaggatggctacgaggacggcatgaacgactatgtccgcatt
cacaacaaccaggtcaatcagaacggcgccctggacggtgccggtgccggaatctccatg
ggcgccgggtccgactcctaccaggtcaccgacaactgggtgtgcggtaacttttccacc
ggcgagggcggggggatcggtcatatcgggttgagcagcgaagccgccaacaacgacccc
gttccactgatcgccagaaaccaggtgcttttcaacgagatcttcaaccagggccccggg
aacttctccggcggcggcatcttcatcggcggtgccccaccgctgctggccggtaccctg
agtccgggcgccggtaatgtgcgcgtggaagacaacctgatagagggtaacggtgccggt
gccggcgacggtgccggtgttcgcctggccgtggtcaacggccaggacgtggctgacaac
aataacagcaatgcctggtacggcgtggatctgttcaacaacatcatcgtcaataacgtg
gccggactggccggcggcggtatctccctgcaggatgccgtcaaggtgcggcttttccat
aacaccatcgccaacaacgacagcctgggaaccgcgggagaggccttccttgatcccaac
cagtcgacaccgcaggatggtgccggcattgtggcctgggcccacagcccgcagttgctg
gccacgggggcggcgatcggggcattttccgatccggaactcgaggactccattgtatgg
cataaccgtcaattctacttcaaaattgccgctggcaaccccgttgatccggcgggtgga
tcggtatgggggctgtgtcccgatatcggtggtaccatcgccgggctcggctgtgcgagc
aacgatccggtttataacgatcttggggtgatcggcgccgcgggcagcctcaacccgcta
acctccattctcaccgacgcaaccgggtacgacgtttcgaatatcgcagcggatccggca
ttcctccggccgtatatcaacggcgcccgctcggatgtcttccaacccgagatcaccacc
gccatccaggccaacccggccttcgacgagggcggcaattttatccggccgaactacggg
ccgctgacgctggtggcagaccccggtgtctcgccgaacctgctctgggattaccatatc
cagtccgcatcgccggcggtggatgccggctcaatcgcgacgccgccggccgatttcgac
ggcgactcccgaaccgcgtctccggacatcggtgcggatgaatatcagaccccttaa
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