Desulfosarcina ovata subsp. sediminis: DSCO28_69700
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Entry
DSCO28_69700 CDS
T06286
Symbol
pcrA
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dov
Desulfosarcina ovata subsp. sediminis
Pathway
dov03420
Nucleotide excision repair
dov03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DSCO28_69700 (pcrA)
03430 Mismatch repair
DSCO28_69700 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dov03400
]
DSCO28_69700 (pcrA)
Enzymes [BR:
dov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSCO28_69700 (pcrA)
DNA repair and recombination proteins [BR:
dov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSCO28_69700 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
DSCO28_69700 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
AAA_30
AAA_11
Viral_helicase1
PUB10_N
Motif
Other DBs
NCBI-ProteinID:
BBO86404
UniProt:
A0A5K8A259
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All DBs
Position
7990458..7992317
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AA seq
619 aa
AA seq
DB search
MQLSPQQQAAVQHTGSPALVVAGAGSGKTRTLTAKFAHLVAEGMPPERIMAITFTNKAAD
EMKGRLLRMTGLGLARFPWVRTYHSACLQILKKHCQLLGYHTPLQIFTAYHQQKTVKEIL
LGLNFDKKHAMGVLGQISNAKNSGHPGAYFDQHPRQGNIRLIDIYDRYEATLKAANAVDF
DNILLLTRNLLRDHADIRQRYQDWFQYILCDEYQDTNDLNEEITALLLKDGNLFAVGDDW
QSIYSFRMSNVGHFLSFQKKYKGSRIFRLEQNYRSADEIVQLGNHVIGHNENRMDKACFS
DKQGGVVETHEFVTDQEEAFWVVDKVRSLVRMKVPLDKMAVLYRTKFCSLPFEQAFRRAD
IPYHMMGGKGFFERMEILDLNCYITAAVFDKDDTAFERIVNTPKRGIGPGTLKKIAGMRG
DGMSLQDAARKAVAERVLSPKLYKSLSELLDLLDEIRDLKPDEAIKRTLSRSGYMDYLEN
YTRSHAMDLTTRQENIEQLIHAAAQKETIAEYLEEAALVREDKEEDEEEQTGGINLSTVH
AAKGLEFHTVFVVGCEEQLFPHWRSMDRAEDLEEERRLMYVAVTRAERCLFITSANFRKG
QFNPRSRFLEEIDAVLGDR
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgcagctttccccccagcagcaagccgctgtgcagcataccggttcgccggcccttgtc
gttgccggtgccggatccggaaaaacccgcaccctgactgccaagttcgcccatctggtg
gccgagggcatgcccccggaacggatcatggcgattaccttcaccaacaaggcggccgac
gaaatgaaaggccggttgttgcgcatgaccggcctgggcctggcccgttttccctgggtg
cggacctatcactccgcctgcctgcagattctcaaaaagcactgccaactgttggggtat
cacacgcccctgcagatttttacggcctatcatcagcagaagacggtcaaggaaattctg
ctggggctcaattttgacaaaaagcatgccatgggcgtcctcggccagatttccaacgcc
aagaacagcggccatccgggcgcctatttcgaccagcatccccggcagggcaacatccgt
ctgatcgacatctacgaccgctacgaggccactctcaaagcggccaacgcggtcgatttc
gacaacatcctgcttctgacccgcaacctgttgcgggatcatgcggatatccgccagcgc
taccaggactggttccagtacatcctgtgcgacgagtaccaggataccaacgatcttaac
gaagagatcaccgccctgctgctcaaggacggcaacctctttgccgtgggggacgactgg
cagtccatttactcgtttcgcatgagcaatgtgggccattttctgtcgttccaaaaaaag
tacaaaggctcacggattttccgcctggaacagaactaccgcagcgccgatgaaatcgtt
caactgggcaaccacgtcatcggccacaacgaaaaccgcatggacaaggcctgcttttcg
gacaagcagggcggcgtggtggagacccacgagttcgtcaccgatcaggaggaggccttt
tgggtggtcgataaggtccgcagtctggtccggatgaaggttcccctggataagatggcg
gtgctgtaccggaccaagttctgttcgctgcctttcgaacaggctttccggcgggccgac
attccctatcacatgatgggtggcaagggctttttcgagcgcatggagatcctggacctg
aactgttatatcactgccgcggtgtttgataaagacgacaccgccttcgagcgcatcgtc
aacacccccaaacgggggatcggtccggggacgctgaagaagatcgccgggatgcgcggt
gacgggatgagccttcaggacgccgcccgcaaggcggtggccgaacgggtgctttcgccg
aaattgtacaagagcctgagtgagctgttggacctcctggatgaaatccgggatctgaaa
cccgatgaagccatcaaacggaccctttcccgcagcggctatatggattacctggaaaac
tatacccgctcccacgccatggacctgaccacccgccaggaaaatatcgagcagctgatc
cacgccgccgcccagaaggagaccatcgccgagtacctggaggaggcggcgctggtgcgc
gaggacaaggaggaggatgaggaggagcaaaccggcgggatcaacctttccacggttcac
gcggccaagggactggaatttcatacggtcttcgttgtcggctgtgaggaacagctcttt
ccccactggcgttccatggaccgggccgaggacctggaagaggaacggcggctcatgtac
gtggcggtgacccgcgcggaacgttgcctgttcatcacgtcggccaatttccgcaagggc
cagttcaatccgcgcagccgcttcctggaagagatcgatgccgtcctgggggatcgctga
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