Devosia oryziradicis: JI749_00870
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Entry
JI749_00870 CDS
T09885
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
doy
Devosia oryziradicis
Pathway
doy03030
DNA replication
doy03410
Base excision repair
doy03420
Nucleotide excision repair
doy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
doy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JI749_00870 (polA)
03410 Base excision repair
JI749_00870 (polA)
03420 Nucleotide excision repair
JI749_00870 (polA)
03440 Homologous recombination
JI749_00870 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
doy03032
]
JI749_00870 (polA)
03400 DNA repair and recombination proteins [BR:
doy03400
]
JI749_00870 (polA)
Enzymes [BR:
doy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JI749_00870 (polA)
DNA replication proteins [BR:
doy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JI749_00870 (polA)
DNA repair and recombination proteins [BR:
doy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
JI749_00870 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JI749_00870 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
QQR36227
LinkDB
All DBs
Position
191483..194398
Genome browser
AA seq
971 aa
AA seq
DB search
MHLLLVDGSGYIFRAFHALPPLNRKSDGLPVGCVQGFCNMLWKLMEDLKGEDEPTHMAVI
FDAKGKTFRDDFYAEYKAHRPPAPPELVPQFPLTRAATRAYNIESIEMEGWEADDIIATY
ACQARAAGGKVTIVSSDKDLMQLVEPDGSIRLLDTIPRPGQPPLRWIGVEEVLNKFGVTP
DKVIDVQALCGDSVDNVPGVPGIGVKTAAELINTYGNLETLLERAGEIKQNARREKLIAN
AELARISKRLVTLEQKVPVELELSALARQPVEPGKLFPFLKAMEFVTISKRLGGLLNADP
EAWEADPALAAAPASPVGFNNEARAEARAARQEAEGRAGSPVVLHAAAMHEATKAIPWTP
ENYEIIRDAAHLQRWIDMAYREGLVATDAESTGLDNQTADLVGISFATQPGNGAYLPLGH
TQGEGDIFGGGKAEGQMDTRQALDMLRPLFADRSILKIFHNAKYDLGLLARYDVAVNSYD
DTLLLSYSLDGPQFNTMSELADHWLGVPGQSIKDLIGTGKGQKTFAQVDIPAAARYAAED
SDMTLRLWRILKPRLAAEGMTTLYETIERPLAPVLARMEGRGISVDRQILARLSGDFSQR
AAALEAEAYELAGSNFNLGSPKQLGEILFDRMGLEGGTKTKTGAWSTGADVLEDLAAKGV
PLARTIVDWRQLTKLMGTYTNALPEYMNARTGRVHTTYSQHSVLTGRLSSNDPNLQNIPV
RTEDGRKIRTAFVAAPGKILISADYSQIELRVLAHIADIQALKDAFEEGLDIHAMTASEM
FGVPVEGMPSDVRRRAKAINFGIIYGISAFGLANQLGIERSVAGDYIKTYFERFPGIKDY
MDEQRRRVKIDGYVMTLFGRKINFPNANSSHAAERSFVERASINAPIQGTAADIIRRAMI
RMEPELQKAGIEADMLLQVHDELIFEVPQGTENDAMPVIKRVMEGAAEPAVRLNVPIQVD
AHAAHNWDEAH
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgctgctcgtcgacggctcgggctatattttccgcgcctttcacgccctgccc
ccgctcaaccgcaagtccgatgggctgccggtcggctgcgtccagggcttctgcaacatg
ctgtggaagctgatggaggacctaaagggcgaggacgagccgacccatatggccgtcatc
ttcgatgccaagggcaagaccttccgcgacgatttctatgccgagtacaaggcacatcgc
ccccccgcgccgcccgagctggtgccgcaattcccgctgacccgagccgccacccgcgcc
tacaatatcgagtccatcgaaatggagggctgggaggccgacgacatcatcgccacctat
gcctgccaggcccgcgccgccggcggcaaggtgaccatcgtctcgtccgacaaggacctg
atgcaactcgtcgagcctgatggctcgatccgcctcctcgataccatcccccgccccggc
cagccgcccctgcgctggatcggcgtcgaggaagtgcttaacaagttcggtgtaacgccc
gacaaggtcatcgacgtgcaggcgctctgcggcgacagcgtcgacaacgtgcccggtgtc
cccgggatcggcgtcaagacggcggccgagctgatcaatacctatggcaatctcgaaacc
ctgctcgagcgggccggcgagatcaagcagaatgcccggcgcgagaagctgatcgccaat
gccgaattggcgcgcatttccaagcgcctggtgacgctcgagcagaaggtgcccgtcgag
ctcgaactctccgccctcgcccgccagccggtggagccgggcaagctcttccccttcctc
aaggcgatggaattcgtcaccatctccaagcgcctgggcgggttgctcaatgccgatccc
gaggcctgggaggccgacccggccctggccgccgcgccggcatcgccggtcgggttcaac
aacgaggcccgtgccgaagcccgcgccgcgcgccaggaggccgagggccgcgccggctcg
cccgtcgtgctccatgccgccgccatgcacgaggccaccaaggccattccgtggacgccc
gaaaactacgagatcatccgcgacgccgcgcacctgcagcgctggatcgacatggcctat
cgcgaaggcctcgtcgccaccgacgcggaatcgaccggcctcgacaaccagaccgccgac
ttggtcggcatcagctttgccacccagccgggcaatggcgcctatctccccctcggccac
acccagggcgaaggcgatatcttcggtggcggcaaggccgagggccagatggacacgcgc
caggccctggacatgctgcggccgctgtttgccgaccgctcgatcctcaagatcttccac
aatgccaaatacgacctgggcctgctcgcccgctacgacgtcgcggtgaactcctacgac
gacacgctgctgctgagctattcgctcgatggcccgcaattcaacaccatgagcgagctg
gccgatcactggctcggcgtccccggccagtcgatcaaggacctgatcggcacgggcaag
ggccaaaagaccttcgcccaggtcgatatcccggccgccgcgcgctatgccgccgaagac
agcgacatgaccctgcgcctctggcgcatcctcaagccgcgcctcgccgccgagggcatg
accacgctctacgaaaccatcgagcgccccctggcgccggtgctggcccgcatggaaggt
cgcggcatctccgtcgaccggcagattctggcgagattgtcgggagatttctcccagcgt
gccgccgccctcgaggcagaagcctatgagctggccgggtccaatttcaacctcggctcc
cccaagcagctgggcgaaatcctgttcgaccgcatggggctcgaaggcggcaccaagacc
aagaccggcgcctggtcgaccggcgccgatgtgctggaggacctcgcggccaagggcgtt
ccgctcgcccgcaccatcgtcgactggcgccagcttaccaagctgatgggcacctacacc
aacgccttgcccgaatacatgaatgcccggaccggccgcgtgcacaccacctattcccag
cactccgtgctgaccgggcgcctctcctccaacgatccgaacctccagaacatccccgtc
cgcaccgaagatggccgcaagatccgcaccgccttcgtcgccgccccgggcaagatcctg
atctcggccgactattcgcagatcgaactgcgcgtcctcgcccatatcgccgatatccag
gcgctcaaggacgcgttcgaggaaggtctcgacatccatgccatgacagccagcgaaatg
ttcggcgtcccggtcgagggcatgccctccgatgtccgccgccgcgccaaggcgatcaat
ttcggcatcatctacggcatttccgccttcggcctggccaaccagctgggcatcgagcgc
tcggtggcgggcgactatatcaagacctatttcgagcgcttccccggcatcaaggactat
atggacgagcagcgccggcgggtgaaaatcgacggctatgtgatgacgctgttcggccgc
aagatcaatttccccaatgccaactcgtcccacgccgccgaacgcagcttcgtcgaacgc
gcctcgatcaatgcccccatccagggcactgccgccgacatcatccgccgcgccatgatc
cgcatggagcccgaactgcaaaaggccggcatcgaagccgacatgctgctgcaggtgcat
gacgagctgatcttcgaagtgccacagggtaccgaaaacgacgccatgccggtcatcaag
cgcgtcatggaaggcgcggccgaacccgccgtgcgtctcaacgtccccatccaggtcgac
gcccacgcggcccacaactgggacgaagcgcactag
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