Devosia oryziradicis: JI749_01590
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Entry
JI749_01590 CDS
T09885
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
doy
Devosia oryziradicis
Brite
KEGG Orthology (KO) [BR:
doy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
doy03016
]
JI749_01590
Enzymes [BR:
doy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JI749_01590
Transfer RNA biogenesis [BR:
doy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JI749_01590
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
QQR36359
LinkDB
All DBs
Position
complement(332440..333054)
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AA seq
204 aa
AA seq
DB search
MTIRLHRGDLPDLGRFGREVAVDTETMGLDPHRDRLCVVQLSAGDGSADIVQLPQDATEA
PNLVRLLADPGVTKIFHYARFDVAALKQRFGVVTGPLYCTKIASRLVRTYTDRHGLKDLV
RELLNIDLSKQQQSSDWGADKLTEAQLDYAASDVLYLHDLKRHLDRMLKRENRMELAQQC
FDFLPTRCELDLLGWQETDIFAHS
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgaccatccgactgcatcgcggcgatctgcctgaccttggccgctttggccgcgaggtc
gctgttgataccgagaccatggggctcgacccgcatcgcgaccggctctgcgtggtccag
ctctcggcaggcgatggcagcgccgatatcgtgcagcttccccaggacgcgaccgaggcg
cccaacctggtccgcttgctcgccgatcccggcgtcaccaagattttccactatgcccgg
ttcgatgtggccgcgctcaagcagcgcttcggcgtggtcaccggcccgctctactgcacc
aagatcgcctcacgcctcgtgcgcacctataccgatcgccacggactaaaagacctggtg
cgcgaactgctcaacatcgacctctccaagcagcagcagagctcggactggggtgcagac
aagctgaccgaggcgcagctcgattatgccgcctccgacgtgctctacctgcacgatctc
aagcgccatctcgatcgcatgctcaagcgcgagaaccgcatggaactggcgcagcaatgc
ttcgactttctccccacccgctgcgagctcgatctgctgggctggcaggaaaccgatatc
ttcgcccatagctag
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